Browse Element(s) Details


Os.54248.1.S1_at

Description gb:AK102789.1
DB_XREF= gi:32987998
TID=Os.54248.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107O17, full insert sequence.
FL= gb:AK102789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3193011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31900OsAffx.17283.1.S1_at11/118+19637698..19639363hypothetical protein
LOC_Os08g31900OsAffx.26378.1.S1_at2/118+19637698..19639363hypothetical protein
LOC_Os08g31910Os.20810.4.S1_at3/118+19642384..19648692expressed protein
LOC_Os08g31910OsAffx.8676.1.S1_at1/118+19642384..19648692expressed protein
LOC_Os08g31910Os.20810.2.S1_x_at1/118+19642384..19648692expressed protein
LOC_Os08g31920Os.20810.2.S1_x_at10/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31920Os.20810.2.S1_at8/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31930Os.54248.1.S1_at11/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31930Os.32811.1.S1_at3/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein
LOC_Os08g31950Os.13954.1.S1_x_at10/118+19681458..19682008expressed protein
LOC_Os08g31960OsAffx.29459.1.S1_at11/118+19690539..19693546hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54248.1.S1_at--820--2391Chr08:19667682..19667706 (25 bp)
AAACTATACCTTGCTCAACTTCTAC
LOC_Os08g31930
Os.54248.1.S1_at--357--8871Chr08:19667722..19667746 (25 bp)
TGATGATAGAGTCTACGGCCTCCCA
LOC_Os08g31930
Os.54248.1.S1_at--946--8911Chr08:19667891..19667915 (25 bp)
TGAGCCTGAGGAGCTTCTTCTGAGC
LOC_Os08g31930
Os.54248.1.S1_at--1042--711Chr08:19667920..19667944 (25 bp)
ATGTTTGCCGGTCTCAATGGGTACA
LOC_Os08g31930
Os.54248.1.S1_at--825--7031Chr08:19667940..19667964 (25 bp)
GTACACTCGTATTGTCTTGATCCTC
LOC_Os08g31930
Os.54248.1.S1_at--1137--10751Chr08:19667967..19667991 (25 bp)
TTGACGCCATGGACGTGCATACACT
LOC_Os08g31930
Os.54248.1.S1_at--91--7991Chr08:19668004..19668028 (25 bp)
GGATGCTCTATCAGCGTTATCGCTA
LOC_Os08g31930
Os.54248.1.S1_at--1067--4631Chr08:19668017..19668041 (25 bp)
GCGTTATCGCTAGTCTGAACTCTGA
LOC_Os08g31930
Os.54248.1.S1_at--26--8971Chr08:19668087..19668111 (25 bp)
TGAAATGCATCTTCTCTGAGCTGAT
LOC_Os08g31930
Os.54248.1.S1_at--514--6431Chr08:19668109..19668133 (25 bp)
GATCATTTGCTTCAGGCCTTGTTAT
LOC_Os08g31930
Os.54248.1.S1_at--1011--7811Chr08:19668216..19668240 (25 bp)
GGTAAATCTTACGTGCCCAGTCTAC
LOC_Os08g31930
Target Sequence 
AAACTATACCTTGCTCAACTTCTACCGACACTTTCATATTTGATGATAGAGTCTACGGCCTCCCAGAATCACCGTCTGGG
CAAGGGGCATGTTACCAGTGCCACTGTCGTGAGCCTGAGGAGCTTCTTCTGAGCTGCCATGTTTGCCGGTCTCAATGGGT
ACACTCGTATTGTCTTGATCCTCCATTGACGCCATGGACGTGCATACACTGCAGAGATCTTCGGATGCTCTATCAGCGTT
ATCGCTAGTCTGAACTCTGAAACCTGGATATTCGTTGATTAGAGGTTATATATGGCTTTCGCATTTGAAATGCATCTTCT
CTGAGCTGATCATTTGCTTCAGGCCTTGTTATATAGGTTGAGAATTGACAATTACTGGCTTCATAATTGCAGTATGCAAA
TTGTTGTACTAATTGTGAAGTTGTACTGTTTTTGGGTAAATCTTACGTGCCCAGTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis