Browse Element(s) Details


OsAffx.29459.1.S1_at

Description tigr:9636.m03193
TID=OsAffx.29459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3196011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31930Os.54248.1.S1_at11/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31930Os.32811.1.S1_at3/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein
LOC_Os08g31950Os.13954.1.S1_x_at10/118+19681458..19682008expressed protein
LOC_Os08g31960OsAffx.29459.1.S1_at11/118+19690539..19693546hypothetical protein
LOC_Os08g31970Os.17983.1.S1_at11/118+19693933..19696825NHL repeat-containing protein, putative, expressed
LOC_Os08g31980Os.21893.3.A1_at10/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31980Os.52425.1.S1_x_at1/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31990OsAffx.31264.2.S1_at10/118+19709192..19710744hypothetical protein
LOC_Os08g31990Os.38395.5.S1_at1/118+19709192..19710744hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29459.1.S1_at--160--7811Chr08:19692974..19692998 (25 bp)
GGTCTCCCGAGAAACGGCATCCGGC
LOC_Os08g31960
OsAffx.29459.1.S1_at--669--8271Chr08:19692989..19693013 (25 bp)
GGCATCCGGCGTGGCGAACGAAGGT
LOC_Os08g31960
OsAffx.29459.1.S1_at--810--2611Chr08:19693116..19693140 (25 bp)
AACCCTGGAGCGGCGCTAGCATAGG
LOC_Os08g31960
OsAffx.29459.1.S1_at--704--4571Chr08:19693211..19693235 (25 bp)
GCGCTCGGTGGCAGCCCACTGACGA
LOC_Os08g31960
OsAffx.29459.1.S1_at--441--8551Chr08:19693278..19693302 (25 bp)
TGGAGGTCCCCGTTGACAGATCGCG
LOC_Os08g31960
OsAffx.29459.1.S1_at--929--2131Chr08:19693293..19693317 (25 bp)
ACAGATCGCGGCTGCATGAGTCCGG
LOC_Os08g31960
OsAffx.29459.1.S1_at--1047--4131Chr08:19693299..19693323 (25 bp)
CGCGGCTGCATGAGTCCGGCATCGA
LOC_Os08g31960
OsAffx.29459.1.S1_at--1061--8051Chr08:19693381..19693405 (25 bp)
GGAGACGCCGGAGAACAGTCAGCTT
LOC_Os08g31960
OsAffx.29459.1.S1_at--291--2451Chr08:19693394..19693418 (25 bp)
AACAGTCAGCTTGGAGGCCGTGCGT
LOC_Os08g31960
OsAffx.29459.1.S1_at--158--1551Chr08:19693401..19693425 (25 bp)
AGCTTGGAGGCCGTGCGTGTCCCTT
LOC_Os08g31960
OsAffx.29459.1.S1_at--1152--7291Chr08:19693413..19693437 (25 bp)
GTGCGTGTCCCTTCGTTGCGGCGTT
LOC_Os08g31960
Target Sequence 
GGTCTCCCGAGAAACGGCATCCGGCGTGGCGAACGAAGGTGGCATGGCATCCGGGGGGCGGAGAAGGGAGTGAAGGAGGA
TGGAGGCGGTGAAGCGGTGGAGGGCAGCGGCGGCCCTCCCCCTGGTGGCGGTGGAGACCGGGAACCCTGGAGCGGCGCTA
GCATAGGAGGGCGCCGAGGGGCAGCCGACAGTAGCCGTCGTCAGCTTCTTCGTTGGCACGCCGCTGTACAGGCACCAGCG
CTCGGTGGCAGCCCACTGACGAGGATCGCGCGGATGCTTGTCGTGTCGGCGAGGAAGTGGGGTGTGGAGGTCCCCGTTGA
CAGATCGCGGCTGCATGAGTCCGGCATCGAGGGCAGCCACAAGCTGGAGCACACCGAGCAGTTCGCGTGCCTTGACAGGG
CGGCGGTGGAGACGCCGGAGAACAGTCAGCTTGGAGGCCGTGCGTGTCCCTTCGTTGCGGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis