Browse Element(s) Details


Os.53351.1.S1_x_at

Description gb:AK072217.1
DB_XREF= gi:32982240
TID=Os.53351.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159I12, full insert sequence.
FL= gb:AK072217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3194010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31910Os.20810.4.S1_at3/118+19642384..19648692expressed protein
LOC_Os08g31910OsAffx.8676.1.S1_at1/118+19642384..19648692expressed protein
LOC_Os08g31910Os.20810.2.S1_x_at1/118+19642384..19648692expressed protein
LOC_Os08g31920Os.20810.2.S1_x_at10/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31920Os.20810.2.S1_at8/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31930Os.54248.1.S1_at11/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31930Os.32811.1.S1_at3/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein
LOC_Os08g31950Os.13954.1.S1_x_at10/118+19681458..19682008expressed protein
LOC_Os08g31960OsAffx.29459.1.S1_at11/118+19690539..19693546hypothetical protein
LOC_Os08g31970Os.17983.1.S1_at11/118+19693933..19696825NHL repeat-containing protein, putative, expressed
LOC_Os08g31980Os.21893.3.A1_at10/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31980Os.52425.1.S1_x_at1/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53351.1.S1_x_at--179--5751NONE
GACGGCAACGTTTCCGGTGGCAAGA
NONE
Os.53351.1.S1_x_at--1083--5211Chr08:19675450..19675474 (25 bp)
GAATTTTGTAGAGCGCTGGCTTTCT
LOC_Os08g31940
Os.53351.1.S1_x_at--164--111Chr08:19675500..19675524 (25 bp)
ATTCTTCTATGGCTTCGTTATCTTT
LOC_Os08g31940
Os.53351.1.S1_x_at--120--1551Chr08:19675525..19675549 (25 bp)
AGCATTTTTATGTCTCTCGTATTTG
LOC_Os08g31940
Os.53351.1.S1_x_at--8--5031Chr08:19675617..19675641 (25 bp)
GCAGTGGACCGAGATTCCAACGTTA
LOC_Os08g31940
Os.53351.1.S1_x_at--278--9211Chr08:19675632..19675656 (25 bp)
TCCAACGTTAAGGTACTCTTGCAGT
LOC_Os08g31940
Os.53351.1.S1_x_at--361--2331Chr08:19675678..19675702 (25 bp)
AAAGATTACTGCCACGTGCTGACAA
LOC_Os08g31940
Os.53351.1.S1_x_at--70--9211Chr08:19675687..19675711 (25 bp)
TGCCACGTGCTGACAACCTGAAGTT
LOC_Os08g31940
Os.53351.1.S1_x_at--152--10471Chr08:19675732..19675756 (25 bp)
TTACCATTGATCTACTTGCTTCGGG
LOC_Os08g31940
Os.53351.1.S1_x_at--183--8251Chr08:19675781..19675805 (25 bp)
GGCAGTTTACCTCATTTGTGTGACT
LOC_Os08g31940
Os.53351.1.S1_x_at--1079--7452Chr08:19675798..19675822 (25 bp)
GTGTGACTGAAATTCTTCTGTACAT
LOC_Os08g31940
Target Sequence 
GACGGCAACGTTTCCGGTGGCAAGAATTTTGTAGAGCGCTGGCTTTCTTCTCTTCCAAACTGATTATTTATCCATTCTTC
TATGGCTTCGTTATCTTTAGCATTTTTATGTCTCTCGTATTTGTAAATATATCGATGAAGACATGAACCCCAGAAAACAC
CCANCAAAAAAGAAGATTAAAAGTTGAGGAGCAGTGGACCGAGATTCCAACGTTAAGGTACTCTTGCAGTGTACTAAGAG
TCATGAAAACGAAAGATTACTGCCACGTGCTGACAACCTGAAGTTGAATNGACGAATTGTTAAGATTACCATTGATCTAC
TTGCTTCGGGATGTTTAATNTACCTGTATATGATGGCAGTTTACCTCATTTGTGTGACTGAAATTCTTCTGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53351.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis