Browse Element(s) Details


Os.17983.1.S1_at

Description gb:AK101578.1
DB_XREF= gi:32986787
TID=Os.17983.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050N07, full insert sequence.
FL= gb:AK101579.1 gb:AK101578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3197011/11NHL repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein
LOC_Os08g31950Os.13954.1.S1_x_at10/118+19681458..19682008expressed protein
LOC_Os08g31960OsAffx.29459.1.S1_at11/118+19690539..19693546hypothetical protein
LOC_Os08g31970Os.17983.1.S1_at11/118+19693933..19696825NHL repeat-containing protein, putative, expressed
LOC_Os08g31980Os.21893.3.A1_at10/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31980Os.52425.1.S1_x_at1/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31990OsAffx.31264.2.S1_at10/118+19709192..19710744hypothetical protein
LOC_Os08g31990Os.38395.5.S1_at1/118+19709192..19710744hypothetical protein
LOC_Os08g32000OsAffx.17286.1.S1_at11/118+19719246..19719512hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17983.1.S1_at--381--4471Chr08:19696354..19696378 (25 bp)
GCCTGCATCTTATGGCAAGGTGCCT
LOC_Os08g31970
Os.17983.1.S1_at--736--3171Chr08:19696386..19696410 (25 bp)
AATTGGTGGCGCTTCTAGATGGTCC
LOC_Os08g31970
Os.17983.1.S1_at--644--6391Chr08:19696438..19696462 (25 bp)
GATCGAGGCCAACTTATCGGGCTTT
LOC_Os08g31970
Os.17983.1.S1_at--848--2991Chr08:19696541..19696565 (25 bp)
AATGTTCTCTAAGCTTGATTGCCTG
LOC_Os08g31970
Os.17983.1.S1_at--713--71Chr08:19696558..19696582 (25 bp)
ATTGCCTGTATGCACGCATTTGCTT
LOC_Os08g31970
Os.17983.1.S1_at--451--6871Chr08:19696586..19696610 (25 bp)
GTATTGTCTCCATGTTGCTATCTGC
LOC_Os08g31970
Os.17983.1.S1_at--45--9091Chr08:19696601..19696625 (25 bp)
TGCTATCTGCTGTAGTAGCGCCTAA
LOC_Os08g31970
Os.17983.1.S1_at--642--7451Chr08:19696640..19696664 (25 bp)
GTGTCAGTATATTCTGCTCTATCGA
LOC_Os08g31970
Os.17983.1.S1_at--265--6491Chr08:19696688..19696712 (25 bp)
GATATGTGCTCGTCTTAAGTGGTGA
LOC_Os08g31970
Os.17983.1.S1_at--657--10472Chr08:19696761..19696785 (25 bp)
TTACTGCTGCTATTCTCGTGTCAAA
LOC_Os08g31970
Os.17983.1.S1_at--615--2351Chr08:19696783..19696807 (25 bp)
AAAGCTTTGTCATGCCTGTTAACGT
LOC_Os08g31970
Target Sequence 
GCCTGCATCTTATGGCAAGGTGCCTGCTGGTGAATTGGTGGCGCTTCTAGATGGTCCAGAACTCAGCAATAAGATAGATG
ACATGATCGAGGCCAACTTATCGGGCTTTTCAGGTCAAGAGAATAATCATTGCTCAGCTGTCAAATGTTCTGGTATAAGC
AGGAGGAGGAGGTTGCATGGAGAGAGTAATGTTCTCTAAGCTTGATTGCCTGTATGCACGCATTTGCTTGGGGTATTGTC
TCCATGTTGCTATCTGCTGTAGTAGCGCCTAACTAAAAAACCTATCGTGTCAGTATATTCTGCTCTATCGAATGTAAGTA
CAATAACTAGAACTGATATGTGCTCGTCTTAAGTGGTGATGTCATGTATAAGTGTGATCAGGGTATGGTAAGCTCATGTA
ATGATTGTTACTGCTGCTATTCTCGTGTCAAAGCTTTGTCATGCCTGTTAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis