Browse Element(s) Details


Os.13954.1.S1_x_at

Description gb:BI797373
DB_XREF= gi:15849083
DB_XREF=H074F07
CLONE=H074F07
TID=Os.13954.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.13954 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3195010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31920Os.20810.2.S1_x_at10/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31920Os.20810.2.S1_at8/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31930Os.54248.1.S1_at11/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31930Os.32811.1.S1_at3/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein
LOC_Os08g31950Os.13954.1.S1_x_at10/118+19681458..19682008expressed protein
LOC_Os08g31960OsAffx.29459.1.S1_at11/118+19690539..19693546hypothetical protein
LOC_Os08g31970Os.17983.1.S1_at11/118+19693933..19696825NHL repeat-containing protein, putative, expressed
LOC_Os08g31980Os.21893.3.A1_at10/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31980Os.52425.1.S1_x_at1/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13954.1.S1_x_at--595--4091Chr08:19681786..19681810 (25 bp)
CGACTACATCGTCCGGCTCAAGGCG
LOC_Os08g31950
Os.13954.1.S1_x_at--1055--2071Chr08:19681781..19681805 (25 bp)
ACATCGTCCGGCTCAAGGCGAGGGT
LOC_Os08g31950
Os.13954.1.S1_x_at--1083--4211Chr08:19681669..19681693 (25 bp)
CCGCGATCGATCATTGCTTGCTTGC
LOC_Os08g31950
Os.13954.1.S1_x_at--636--4131Chr08:19681668..19681692 (25 bp)
CGCGATCGATCATTGCTTGCTTGCA
LOC_Os08g31950
Os.13954.1.S1_x_at--411--4631Chr08:19681667..19681691 (25 bp)
GCGATCGATCATTGCTTGCTTGCAC
LOC_Os08g31950
Os.13954.1.S1_x_at--287--9071Chr08:19681655..19681679 (25 bp)
TGCTTGCTTGCACCGAGATGAGAGA
LOC_Os08g31950
Os.13954.1.S1_x_at--485--3631Chr08:19681653..19681677 (25 bp)
CTTGCTTGCACCGAGATGAGAGATA
LOC_Os08g31950
Os.13954.1.S1_x_at--456--9071Chr08:19681651..19681675 (25 bp)
TGCTTGCACCGAGATGAGAGATATA
LOC_Os08g31950
Os.13954.1.S1_x_at--813--5211Chr08:19681596..19681620 (25 bp)
GAATTCATTTCGAACAAGACAGCAT
LOC_Os08g31950
Os.13954.1.S1_x_at--817--91Chr08:19681590..19681614 (25 bp)
ATTTCGAACAAGACAGCATAAAAGA
LOC_Os08g31950
Os.13954.1.S1_x_at--459--3231NONE
CAAGACAGCATAAAAGACATTACTA
NONE
Target Sequence 
CGACTACATCGTCCGGCTCAAGGCGAGGGTCGAGCTCCTCAGGGCGCTCTCCGCGCTCTACGACGAGCTTCCACTCCCCG
CCGGCGCCGCCGCCGGCGTCTGAGCCCGCCGCCGGGGCNNNGGTGGCGCNCCGCGATCGATCATTGCTTGCTTGCACCGA
GATGAGAGATATACAGTAGCTATGTATAGAAGAAGAATTGAATGAATTCATTTCGAACAAGACAGCATAAAAGACATTAC
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13954.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis