Browse Element(s) Details


OsAffx.31264.2.S1_at

Description tigr:9636.m03196
TID=OsAffx.31264.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3199010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31960OsAffx.29459.1.S1_at11/118+19690539..19693546hypothetical protein
LOC_Os08g31970Os.17983.1.S1_at11/118+19693933..19696825NHL repeat-containing protein, putative, expressed
LOC_Os08g31980Os.21893.3.A1_at10/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31980Os.52425.1.S1_x_at1/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31990OsAffx.31264.2.S1_at10/118+19709192..19710744hypothetical protein
LOC_Os08g31990Os.38395.5.S1_at1/118+19709192..19710744hypothetical protein
LOC_Os08g32000OsAffx.17286.1.S1_at11/118+19719246..19719512hypothetical protein
LOC_Os08g32010OsAffx.29460.1.S1_at10/118+19725548..19726611hypothetical protein
LOC_Os08g32020Os.25754.2.S1_x_at2/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32020Os.53479.1.S1_x_at1/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32030OsAffx.20387.1.S1_x_at1/118+19733568..19736501transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31264.2.S1_at--47--4591NONE
GCGACGGGAGGGGACCAATTCCATC
NONE
OsAffx.31264.2.S1_at--141--3151Chr08:19709285..19709309 (25 bp)
AATTCCATCGGGGAAAAGCACCATG
LOC_Os08g31990
OsAffx.31264.2.S1_at--636--1731Chr08:19709266..19709290 (25 bp)
ACCATGGCGTGCACTGCACACCTGG
LOC_Os08g31990
OsAffx.31264.2.S1_at--1142--851Chr08:19709263..19709287 (25 bp)
ATGGCGTGCACTGCACACCTGGGCT
LOC_Os08g31990
OsAffx.31264.2.S1_at--409--8371Chr08:19709261..19709285 (25 bp)
GGCGTGCACTGCACACCTGGGCTGC
LOC_Os08g31990
OsAffx.31264.2.S1_at--216--8651Chr08:19709244..19709268 (25 bp)
TGGGCTGCCCGGCAAAACAGTCCAA
LOC_Os08g31990
OsAffx.31264.2.S1_at--140--8331Chr08:19709242..19709266 (25 bp)
GGCTGCCCGGCAAAACAGTCCAACA
LOC_Os08g31990
OsAffx.31264.2.S1_at--565--8911Chr08:19709239..19709263 (25 bp)
TGCCCGGCAAAACAGTCCAACACTG
LOC_Os08g31990
OsAffx.31264.2.S1_at--643--2391Chr08:19709230..19709254 (25 bp)
AAACAGTCCAACACTGTGGCGACTA
LOC_Os08g31990
OsAffx.31264.2.S1_at--1074--1111Chr08:19709226..19709250 (25 bp)
AGTCCAACACTGTGGCGACTACAGC
LOC_Os08g31990
OsAffx.31264.2.S1_at--678--3271Chr08:19709222..19709246 (25 bp)
CAACACTGTGGCGACTACAGCATTT
LOC_Os08g31990
Target Sequence 
GCGACGGGAGGGGACCAATTCCATCGGGGAAAAGCACCATGGCGTGCACTGCACACCTGGGCTGCCCGGCAAAACAGTCC
AACACTGTGGCGACTACAGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31264.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis