Browse Element(s) Details


OsAffx.29460.1.S1_at

Description tigr:9636.m03198
TID=OsAffx.29460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3201010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31980Os.21893.3.A1_at10/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31980Os.52425.1.S1_x_at1/118+19697486..19703238trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g31990OsAffx.31264.2.S1_at10/118+19709192..19710744hypothetical protein
LOC_Os08g31990Os.38395.5.S1_at1/118+19709192..19710744hypothetical protein
LOC_Os08g32000OsAffx.17286.1.S1_at11/118+19719246..19719512hypothetical protein
LOC_Os08g32010OsAffx.29460.1.S1_at10/118+19725548..19726611hypothetical protein
LOC_Os08g32020Os.25754.2.S1_x_at2/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32020Os.53479.1.S1_x_at1/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32030OsAffx.20387.1.S1_x_at1/118+19733568..19736501transposon protein, putative, unclassified
LOC_Os08g32040NANA8+19736756..19737622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32050NANA8+19738574..19739692hypothetical protein
LOC_Os08g32060OsAffx.29461.1.S1_at11/118+19742427..19744856U-box domain containing protein, expressed
LOC_Os08g32070NANA8+19748621..19749139amino acid transporter, putative
LOC_Os08g32080Os.8449.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32080Os.56903.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29460.1.S1_at--696--8231NONE
GGCAACCGACGACGTGGATCTAGCT
NONE
OsAffx.29460.1.S1_at--792--1911Chr08:19725804..19726251 (25 bp)
ACGTGGATCTAGCTGCCCTCGGCTG
LOC_Os08g32010
OsAffx.29460.1.S1_at--27--4331Chr08:19725773..19725797 (25 bp)
CCATTGCCTGCAGCTTAGCAACATT
LOC_Os08g32010
OsAffx.29460.1.S1_at--411--9031Chr08:19725765..19725789 (25 bp)
TGCAGCTTAGCAACATTAACGGAGC
LOC_Os08g32010
OsAffx.29460.1.S1_at--1038--2571Chr08:19725748..19725772 (25 bp)
AACGGAGCTGAGATCACGGTGACCT
LOC_Os08g32010
OsAffx.29460.1.S1_at--280--7771Chr08:19725731..19725755 (25 bp)
GGTGACCTCGATAGCAGACCAGCTT
LOC_Os08g32010
OsAffx.29460.1.S1_at--470--1371Chr08:19725716..19725740 (25 bp)
AGACCAGCTTCCAGCTTTAGTCACT
LOC_Os08g32010
OsAffx.29460.1.S1_at--524--3171Chr08:19725683..19725707 (25 bp)
CAAGCTTTCCCAGCGACGGATTCGG
LOC_Os08g32010
OsAffx.29460.1.S1_at--206--10611Chr08:19725663..19725687 (25 bp)
TTCGGCGACAGCTCCTCGAAGTCAA
LOC_Os08g32010
OsAffx.29460.1.S1_at--483--9191Chr08:19725648..19725672 (25 bp)
TCGAAGTCAACCTAGAAGCACCCAT
LOC_Os08g32010
OsAffx.29460.1.S1_at--842--9931Chr08:19725636..19725660 (25 bp)
TAGAAGCACCCATCAGGAGTAGGAT
LOC_Os08g32010
Target Sequence 
GGCAACCGACGACGTGGATCTAGCTGCCCTCGGCTGCTTCCTCCATTGCCTGCAGCTTAGCAACATTAACGGAGCTGAGA
TCACGGTGACCTCGATAGCAGACCAGCTTCCAGCTTTAGTCACTGGCCTCCCCAAGCTTTCCCAGCGACGGATTCGGCGA
CAGCTCCTCGAAGTCAACCTAGAAGCACCCATCAGGAGTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis