Browse Element(s) Details

Os.56903.1.S1_at

Description

gb:AK110561.1
DB_XREF= gi:32995770
TID=Os.56903.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C12, full insert sequence.
FL= gb:AK110561.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g32080	11/11	Homeobox domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g32010	OsAffx.29460.1.S1_at	10/11	8	+	19725548..19726611	hypothetical protein
LOC_Os08g32020	Os.25754.2.S1_x_at	2/11	8	+	19729912..19732953	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32020	Os.53479.1.S1_x_at	1/11	8	+	19729912..19732953	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32030	OsAffx.20387.1.S1_x_at	1/11	8	+	19733568..19736501	transposon protein, putative, unclassified
LOC_Os08g32040	NA	NA	8	+	19736756..19737622	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32050	NA	NA	8	+	19738574..19739692	hypothetical protein
LOC_Os08g32060	OsAffx.29461.1.S1_at	11/11	8	+	19742427..19744856	U-box domain containing protein, expressed
LOC_Os08g32070	NA	NA	8	+	19748621..19749139	amino acid transporter, putative
LOC_Os08g32080	Os.8449.1.S1_at	11/11	8	+	19751177..19755501	Homeobox domain containing protein, expressed
LOC_Os08g32080	Os.56903.1.S1_at	11/11	8	+	19751177..19755501	Homeobox domain containing protein, expressed
LOC_Os08g32090	Os.21287.1.S1_at	10/11	8	+	19765746..19774901	DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090	Os.31771.2.S1_at	1/11	8	+	19765746..19774901	DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090	Os.16899.1.S1_at	1/11	8	+	19765746..19774901	DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32100	Os.51874.1.S1_at	11/11	8	+	19780291..19785934	transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100	Os.25010.1.S1_at	11/11	8	+	19780291..19785934	transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0009653	biological_process	morphogenesis
GO:0009738	biological_process	abscisic acid mediated signaling
GO:0009788	biological_process	negative regulation of abscisic acid mediated signaling
GO:0009825	biological_process	multidimensional cell growth
GO:0009910	biological_process	negative regulation of flower development
GO:0009965	biological_process	leaf morphogenesis
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0005515	molecular_function	protein binding
GO:0016563	molecular_function	transcriptional activator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.56903.1.S1_at--883--733	1	Chr08:19754349..19754373 (25 bp)	GTGATCGAAGGACCGCTCTTTTAAA	LOC_Os08g32080
Os.56903.1.S1_at--687--35	1	Chr08:19754212..19754236 (25 bp)	ATAAGATTCCACTTTTTGGCGCCTT	LOC_Os08g32080
Os.56903.1.S1_at--1005--1039	2	Chr11:19896604..19896906 (25 bp)	TTTTGGCGCCTTTTCATTGGATAGC	NONE
Os.56903.1.S1_at--48--209	1	Chr08:19754089..19754113 (25 bp)	ACATATTTATGCTCGTTTCCCAAAG	LOC_Os08g32080
Os.56903.1.S1_at--582--1029	1	Chr08:19754074..19754098 (25 bp)	TTTCCCAAAGTCTAAGCACCGCTAA	LOC_Os08g32080
Os.56903.1.S1_at--717--505	1	Chr08:19754044..19754068 (25 bp)	GCAGCACATGCATATTTCTCTTAAT	LOC_Os08g32080
Os.56903.1.S1_at--825--681	1	Chr08:19753977..19754001 (25 bp)	GTTTTTTCTCAGCTCGTGTAATCAC	LOC_Os08g32080
Os.56903.1.S1_at--169--791	1	Chr08:19753940..19753964 (25 bp)	GGTTGCTCCGTTTCACAGTTGGCTA	LOC_Os08g32080
Os.56903.1.S1_at--602--489	1	Chr08:19753913..19753937 (25 bp)	GCTTCAGCCGCGGTCAAATTTTGAA	LOC_Os08g32080
Os.56903.1.S1_at--412--135	1	Chr08:19753860..19753884 (25 bp)	AGAGATTGTTTCGTCTTTGTCAGCC	LOC_Os08g32080
Os.56903.1.S1_at--617--1035	1	Chr08:19753801..19753825 (25 bp)	TTTTCAGCGTAGGTCAAGTGCCTTT	LOC_Os08g32080

Target Sequence

GTGATCGAAGGACCGCTCTTTTAAAATTCGAACAAGTTCGGGGGCTTCGGTGCAAAATGGTAGTACCGTAGTTTAATTTT
GTAAAAATAGCCCCCCCCCCCCCCCCTTTTGTAAAAATACAACCGCACTTGTAAAATAAGATTCCACTTTTTGGCGCCTT
TTCATTGGATAGCGACCAGCGGCGACCCACAACTCGATGCGTTTTTTTAAGTTTTTTTTTAAATCAAACTTTTTAAACAG
TGGTTAGGAATCTAACGAACATATTTATGCTCGTTTCCCAAAGTCTAAGCACCGCTAATCTAAGCAGCACATGCATATTT
CTCTTAATTTTTTTTAGAATATCCTGACGACTAGATGTACTCTTTGTTTTGTTTTTTCTCAGCTCGTGTAATCACGTGAA
TTCATATGGTTGCTCCGTTTCACAGTTGGCTACTGCTTCAGCCGCGGTCAAATTTTGAAATTTAGAGCTTATTTTTAGAA
TTAATTTAGAGATTGTTTCGTCTTTGTCAGCCTTCAGCCTTGGCTTTTAAACGCTAAAACTATTTTTTTTCAGCGTAGGT
CAAGTGCCTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis