Browse Element(s) Details


Os.16899.1.S1_at

Description gb:AK108481.1
DB_XREF= gi:32993690
TID=Os.16899.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F04, full insert sequence.
FL= gb:AK108481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3015011/11Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os08g320901/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30110Os.52110.1.S1_at11/117+17765848..17769687expressed protein
LOC_Os07g30120Os.27433.1.S1_at9/117+17770977..17774813hypothetical protein
LOC_Os07g30130Os.26708.1.S1_at11/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30130Os.53383.1.S1_x_at6/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30154Os.51032.1.S1_at11/117+17803718..17804277expressed protein
LOC_Os07g30154Os.8638.1.S1_s_at2/117+17803718..17804277expressed protein
LOC_Os07g30160Os.25244.1.S1_at9/117+17814498..17819065trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006168biological_processadenine salvage
GO:0005829cellular_componentcytosol
GO:0003999molecular_functionadenine phosphoribosyltransferase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16899.1.S1_at--509--3751Chr07:17786365..17786389 (25 bp)
CTCACTCCTAGCTTAGCTACATATA
LOC_Os07g30150
Os.16899.1.S1_at--91--2071Chr07:17786347..17786371 (25 bp)
ACATATATACCACTCTAGCTGCAGA
LOC_Os07g30150
Os.16899.1.S1_at--862--3651Chr07:17786314..17786338 (25 bp)
CTTCTTCTTGGTGCATTCCACTATT
LOC_Os07g30150
Os.16899.1.S1_at--215--91Chr07:17786300..17786324 (25 bp)
ATTCCACTATTCTGTCCATGTGTAG
LOC_Os07g30150
Os.16899.1.S1_at--1100--7432Chr08:19766423..19766839 (25 bp)
GTGTAGTTTAATTTTGTGTCTGCTT
LOC_Os08g32090
Os.16899.1.S1_at--854--4891Chr07:17786260..17786284 (25 bp)
GCTTAAAATTCAGCACTCAGTGTGT
LOC_Os07g30150
Os.16899.1.S1_at--320--2011Chr07:17786226..17786250 (25 bp)
ACTCTAATGGATGGCAACTCTGCTG
LOC_Os07g30150
Os.16899.1.S1_at--389--8511Chr07:17786215..17786239 (25 bp)
TGGCAACTCTGCTGATCGCGGTGTG
LOC_Os07g30150
Os.16899.1.S1_at--279--9331Chr07:17786200..17786224 (25 bp)
TCGCGGTGTGGGTGTAGTAACATCT
LOC_Os07g30150
Os.16899.1.S1_at--602--1171Chr07:17786185..17786209 (25 bp)
AGTAACATCTTTCTTCCGTGGATTC
LOC_Os07g30150
Os.16899.1.S1_at--164--2851Chr07:17786146..17786170 (25 bp)
AATCGCTTTAGGTGTGTCCTTTCCA
LOC_Os07g30150
Target Sequence 
CTCACTCCTAGCTTAGCTACATATATACCACTCTAGCTGCAGAATTTNATTCTTCTTCTTGGTGCATTCCACTATTCTGT
CCATGTGTAGTTTAATTTTGTGTCTGCTTAAAATTCAGCACTCAGTGTGTAAGTGTANNACTCTAATGGATGGCAACTCT
GCTGATCGCGGTGTGGGTGTAGTAACATCTTTCTTCCGTGGATTCGTTTTTTTTATTTNAATCGCTTTAGGTGTGTCCTT
TCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis