Browse Element(s) Details


Os.8024.1.S1_at

Description gb:AK060443.1
DB_XREF= gi:32970461
TID=Os.8024.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8024 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-E08, full insert sequence.
FL= gb:AK060443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3017011/11Beta-ureidopropionase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30154Os.51032.1.S1_at11/117+17803718..17804277expressed protein
LOC_Os07g30154Os.8638.1.S1_s_at2/117+17803718..17804277expressed protein
LOC_Os07g30160Os.25244.1.S1_at9/117+17814498..17819065trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class
LOC_Os07g30190NANA7+17830368..17836580retrotransposon protein, putative, unclassified
LOC_Os07g30200Os.27164.1.A1_a_at11/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.27164.2.S1_at7/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.39963.1.S1_at1/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30210Os.50403.1.S1_at10/117+17844131..17847023Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0009446biological_processputrescine biosynthesis
GO:0003837molecular_functionbeta-ureidopropionase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050126molecular_functionN-carbamoylputrescine amidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8024.1.S1_at--508--10611Chr07:17819443..17819467 (25 bp)
TTCTGGTGACGGGAAACCTCAGCAT
LOC_Os07g30170
Os.8024.1.S1_at--472--5551Chr07:17819431..17819455 (25 bp)
GAAACCTCAGCATGCCGACTTTGGT
LOC_Os07g30170
Os.8024.1.S1_at--1117--7811Chr07:17819409..17819433 (25 bp)
GGTCATTTCTATGGATCCAGCCATT
LOC_Os07g30170
Os.8024.1.S1_at--849--191Chr07:17819387..17819411 (25 bp)
ATTTCTCAGCACCTGATGCTTCTTG
LOC_Os07g30170
Os.8024.1.S1_at--979--3791Chr07:17819348..17819372 (25 bp)
CTCGCTACCGAGATGGCTTGATGAT
LOC_Os07g30170
Os.8024.1.S1_at--154--6511Chr07:17819319..17819343 (25 bp)
GATATGGACCTCAACTTATGTCGCC
LOC_Os07g30170
Os.8024.1.S1_at--186--8951Chr07:17819267..17819291 (25 bp)
TGACTGCCCGTTATGACACGTATGC
LOC_Os07g30170
Os.8024.1.S1_at--1097--10091Chr07:17819247..17819271 (25 bp)
TATGCTTCCTTGCTTTCAGAGTACT
LOC_Os07g30170
Os.8024.1.S1_at--102--1171Chr07:17819200..17819224 (25 bp)
AGTCATTGTTGACCCCTTGATCAAT
LOC_Os07g30170
Os.8024.1.S1_at--769--8051Chr07:17819141..17819165 (25 bp)
GGAGAGCACTCAATTCTGGAACTTA
LOC_Os07g30170
Os.8024.1.S1_at--1011--6111Chr07:17819095..17819119 (25 bp)
GAGGGAACTCTTCAAAATCTGCCAT
LOC_Os07g30170
Target Sequence 
TTCTGGTGACGGGAAACCTCAGCATGCCGACTTTGGTCATTTCTATGGATCCAGCCATTTCTCAGCACCTGATGCTTCTT
GCACCCCATCACTATCTCGCTACCGAGATGGCTTGATGATATCTGATATGGACCTCAACTTATGTCGCCAGATCAAAGAC
AAGTGGGGCTTCCGCATGACTGCCCGTTATGACACGTATGCTTCCTTGCTTTCAGAGTACTTGAAGCCAGATTTTAAACC
TCAAGTCATTGTTGACCCCTTGATCAATAAGAGTGCGTAATGGTGAGAAACTTGGTGCCAAAGGAGAGCACTCAATTCTG
GAACTTACACATTTAGAGCATTCAGTTTGAGGGAACTCTTCAAAATCTGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis