Browse Element(s) Details


Os.8638.1.S1_s_at

Description gb:BI805240
DB_XREF= gi:15852444
DB_XREF=S034D02
CLONE=S034D02
TID=Os.8638.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0595011/11proline-rich protein, putative, expressed
LOC_Os07g301542/11expressed protein
LOC_Os10g059701/11proline-rich protein, putative, expressed
LOC_Os10g059901/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8638.1.S1_s_at--737--8711Chr10:2983989..2984013 (25 bp)
TGTCGGAGCGCACCTTCGTCGCCGT
LOC_Os10g05950
Os.8638.1.S1_s_at--913--5871Chr10:2983912..2983936 (25 bp)
GAGCCCATCAAGAAGCACTTCTTCG
LOC_Os10g05950
Os.8638.1.S1_s_at--115--9733Chr10:3005822..3005843 (22 bp)
TCAAGAAGCACTTCTTCGACCACTT
LOC_Os10g05990
Os.8638.1.S1_s_at--947--1771Chr10:2983764..2983788 (25 bp)
ACCCGCCGGCGAGGAACTAATTGAG
LOC_Os10g05950
Os.8638.1.S1_s_at--289--8171Chr10:2983752..2983776 (25 bp)
GGAACTAATTGAGCCGTCGATCGAG
LOC_Os10g05950
Os.8638.1.S1_s_at--937--7212Chr07:17804125..17804144 (20 bp)
GTCGATCGAGCTCACACATTATTAT
LOC_Os07g30154
Os.8638.1.S1_s_at--592--3031Chr10:2983679..2983703 (25 bp)
AATGCCATTATGATATATTGTTGTC
LOC_Os10g05950
Os.8638.1.S1_s_at--461--9731Chr10:2983656..2983680 (25 bp)
TCAAGGTTGGAGTAGCGCAGACAGC
LOC_Os10g05950
Os.8638.1.S1_s_at--322--6651Chr10:2983622..2983646 (25 bp)
GTTGATTTTGAGTTTCTTGGGTCGA
LOC_Os10g05950
Os.8638.1.S1_s_at--1089--8892Chr07:17804239..17804263 (25 bp)
TGAGTTTCTTGGGTCGATCGAATAA
LOC_Os07g30154
Os.8638.1.S1_s_at--1151--6351Chr10:2983599..2983623 (25 bp)
GATCGAATAAGGTTTCAGGTTGATT
LOC_Os10g05950
Target Sequence 
TGTCGGAGCGCACCTTCGTCGCCGTCGCCGGCANAGACCCNCTATGTGTCNCCGGTGTGCGCGTCGGCGACCATCTGCGA
GCCCATCAAGAAGCACTTCTTCGACCACTTCCACCACAACAAGCCGGCGCCCGCCGCACCGTCGACCAAGCCAGCGCCCA
AGCCGCACCCCGACCAGCCGCCGCACCCTAAGCCGACGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCGGCGAGG
AACTAATTGAGCCGTCGATCGAGCTCACACATTATTATGATTCTTTTTAAATTNCTGCTCTGCGTTAGCTTAATGCCATT
ATGATATATTGTTGTCAAGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATA
AGGTTTCAGGTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8638.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis