Browse Element(s) Details


Os.8638.1.S1_at

Description gb:BI805240
DB_XREF= gi:15852444
DB_XREF=S034D02
CLONE=S034D02
TID=Os.8638.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0595011/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8638.1.S1_at--774--1651Chr10:2984047..2984071 (25 bp)
AGCGCGGCGCATAACAACGCGGCGT
LOC_Os10g05950
Os.8638.1.S1_at--37--4711Chr10:2984044..2984068 (25 bp)
GCGGCGCATAACAACGCGGCGTGCC
LOC_Os10g05950
Os.8638.1.S1_at--655--1651Chr10:2983643..2983667 (25 bp)
AGCGCAGACAGCTTTGTGTTAGTTG
LOC_Os10g05950
Os.8638.1.S1_at--1137--5031Chr10:2983640..2983664 (25 bp)
GCAGACAGCTTTGTGTTAGTTGATT
LOC_Os10g05950
Os.8638.1.S1_at--472--1411Chr10:2983638..2983662 (25 bp)
AGACAGCTTTGTGTTAGTTGATTTT
LOC_Os10g05950
Os.8638.1.S1_at--766--1191Chr10:2983545..2983569 (25 bp)
AGTATCAGGTAGATTTGTCTCAGGA
LOC_Os10g05950
Os.8638.1.S1_at--856--3471Chr10:2983540..2983564 (25 bp)
CAGGTAGATTTGTCTCAGGATTCGT
LOC_Os10g05950
Os.8638.1.S1_at--142--10051Chr10:2983536..2983560 (25 bp)
TAGATTTGTCTCAGGATTCGTTTGC
LOC_Os10g05950
Os.8638.1.S1_at--263--6532Chr07:17804304..17804328 (25 bp)
GATTTGTCTCAGGATTCGTTTGCTT
NONE
Os.8638.1.S1_at--111--10812Chr07:17804307..17804329 (23 bp)
TTGTCTCAGGATTCGTTTGCTTGTT
NONE
Os.8638.1.S1_at--383--9532Chr07:17804310..17804329 (20 bp)
TCTCAGGATTCGTTTGCTTGTTTGT
NONE
Target Sequence 
AGCGCGGCGCATAACAACGCGGCGTGCCCGGGGCNAGGAGCCNGTCNGANGGTNNCATNCANCTGTCGGAGCGCACCTTC
GTCGCCGTCGCCGGCANAGACCCNCTATGTGTCNCCGGTGTGCGCGTCGGCGACCATCTGCGAGCCCATCAAGAAGCACT
TCTTCGACCACTTCCACCACAACAAGCCGGCGCCCGCCGCACCGTCGACCAAGCCAGCGCCCAAGCCGCACCCCGACCAG
CCGCCGCACCCTAAGCCGACGCCGACGTACGGAACACCGAGCCCGTACCACCCGCCGGCGAGGAACTAATTGAGCCGTCG
ATCGAGCTCACACATTATTATGATTCTTTTTAAATTNCTGCTCTGCGTTAGCTTAATGCCATTATGATATATTGTTGTCA
AGGTTGGAGTAGCGCAGACAGCTTTGTGTTAGTTGATTTTGAGTTTCTTGGGTCGATCGAATAAGGTTTCAGGTTGATTT
GTGAGGTTTGAGTCAATACAGGTGTNNTAGTATCAGGTAGATTTGTCTCAGGATTCGTTTGCTTGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis