Browse Element(s) Details


Os.8385.1.S1_s_at

Description gb:AB055842.1
DB_XREF= gi:18676393
TID=Os.8385.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.15), mRNA
DEF=Oryza sativa OsPRP1 mRNA for proline-rich protein, complete cds.
FL= gb:AB055842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0597011/11proline-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein
LOC_Os10g05970Os.37820.1.S1_x_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8385.1.S1_s_at11/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05970Os.8638.1.S1_s_at1/1110+2996967..2998098proline-rich protein, putative, expressed
LOC_Os10g05980Os.11398.1.S1_at11/1110+3001037..3002195proline-rich protein, putative, expressed
LOC_Os10g05990Os.10678.1.S1_at11/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.37820.1.S1_x_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g05990Os.8638.1.S1_s_at1/1110+3004849..3006285proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_x_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.37820.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8018.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8385.1.S1_s_at--452--4251Chr10:2997233..2997257 (25 bp)
CCGGCGAATTAAGCAATGGAAGTTT
LOC_Os10g05970
Os.8385.1.S1_s_at--726--2731Chr10:2997223..2997247 (25 bp)
AAGCAATGGAAGTTTGCATGCATGC
LOC_Os10g05970
Os.8385.1.S1_s_at--159--652Chr12:17869964..17870108 (24 bp)
ATGCATGCATGGTTCGTTTGGTTAG
NONE
Os.8385.1.S1_s_at--446--4931Chr10:2997200..2997224 (25 bp)
GCATGGTTCGTTTGGTTAGTACGTT
LOC_Os10g05970
Os.8385.1.S1_s_at--420--6791Chr10:2997186..2997210 (25 bp)
GTTAGTACGTTTGGTGTTGTTGCAT
LOC_Os10g05970
Os.8385.1.S1_s_at--778--7411Chr10:2997173..2997197 (25 bp)
GTGTTGTTGCATATGATTTCCTGTC
LOC_Os10g05970
Os.8385.1.S1_s_at--950--4951Chr10:2997165..2997189 (25 bp)
GCATATGATTTCCTGTCATGTCAGT
LOC_Os10g05970
Os.8385.1.S1_s_at--391--9271Chr10:2997155..2997179 (25 bp)
TCCTGTCATGTCAGTTTGTCTGCAG
LOC_Os10g05970
Os.8385.1.S1_s_at--144--1211Chr10:2997143..2997167 (25 bp)
AGTTTGTCTGCAGAATAATGGTTTT
LOC_Os10g05970
Os.8385.1.S1_s_at--574--6331Chr10:2997114..2997138 (25 bp)
GATGCATTAGCTTTTACTCACAAGT
LOC_Os10g05970
Os.8385.1.S1_s_at--554--271Chr10:2997019..2997043 (25 bp)
ATATGTGCAACTTGTTTGATCTCAA
LOC_Os10g05970
Target Sequence 
CCGGCGAATTAAGCAATGGAAGTTTGCATGCATGCATGGTTCGTTTGGTTAGTACGTTTGGTGTTGTTGCATATGATTTC
CTGTCATGTCAGTTTGTCTGCAGAATAATGGTTTTNTTTGATGCATTAGCTTTTACTCACAAGTTTAATTTGTGTGTGTG
TGTCTATTTGTTTGGNATCAGCAAGTAATTAATATAATCAGGGATGTGCATAATATATGTGCAACTTGTTTGATCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8385.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis