Browse Element(s) Details


OsAffx.32258.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32258.1
CNT=1
FEA=DNA_39
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF85 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g301803/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30154Os.51032.1.S1_at11/117+17803718..17804277expressed protein
LOC_Os07g30154Os.8638.1.S1_s_at2/117+17803718..17804277expressed protein
LOC_Os07g30160Os.25244.1.S1_at9/117+17814498..17819065trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os07g30170Os.8024.1.S1_at11/117+17818872..17822043Beta-ureidopropionase, putative, expressed
LOC_Os07g30180OsAffx.32258.1.A1_at3/117+17823790..17827524transposon protein, putative, Mutator sub-class
LOC_Os07g30190NANA7+17830368..17836580retrotransposon protein, putative, unclassified
LOC_Os07g30200Os.27164.1.A1_a_at11/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.27164.2.S1_at7/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30200Os.39963.1.S1_at1/117+17836836..17843293Asparaginyl-tRNA synthetase, putative, expressed
LOC_Os07g30210Os.50403.1.S1_at10/117+17844131..17847023Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g30220Os.15994.1.S1_at11/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.7245.1.S1_x_at1/117+17849521..17852776expressed protein
LOC_Os07g30220OsAffx.2609.2.S1_x_at1/117+17849521..17852776expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32258.1.A1_at--636--236Chr06:23583305..23583329 (25 bp)
ATATTACGCCATATATCCCACTTGG
NONE
OsAffx.32258.1.A1_at--955--9957Chr07:17824452..17824471 (20 bp)
TACGCCATATATCCCACTTGGACAA
LOC_Os07g30180
OsAffx.32258.1.A1_at--736--4437Chr06:23583312..23583336 (25 bp)
GCCATATATCCCACTTGGACAAATT
NONE
OsAffx.32258.1.A1_at--198--557Chr06:23583319..23583343 (25 bp)
ATCCCACTTGGACAAATTAGAAGCA
NONE
OsAffx.32258.1.A1_at--204--10037Chr06:23583336..23583360 (25 bp)
TAGAAGCAATTTTCTCTTATCCTCA
NONE
OsAffx.32258.1.A1_at--498--4298Chr07:17824500..17824521 (22 bp)
CCTCATTTGTTCCTTCCTTTAGATA
LOC_Os07g30180
OsAffx.32258.1.A1_at--383--9599Chr07:17824501..17824521 (21 bp)
TCATTTGTTCCTTCCTTTAGATAAA
LOC_Os07g30180
OsAffx.32258.1.A1_at--914--6697Chr06:23583364..23583388 (25 bp)
GTTCCTTCCTTTAGATAAATACTCA
NONE
OsAffx.32258.1.A1_at--1074--6456Chr02:14258617..14258641 (25 bp)
GATAAATACTCAAAATCCCCTTACA
NONE
OsAffx.32258.1.A1_at--882--536Chr02:14258631..14258655 (25 bp)
ATCCCCTTACAATAATGCAATTTCG
NONE
OsAffx.32258.1.A1_at--858--9737Chr06:23583403..23583427 (25 bp)
TAATGCAATTTCGAAGGGACCTTTT
NONE
Target Sequence 
ATATTACGCCATATATCCCACTTGGACAAATTAGAAGCAATTTTCTCTTATCCTCATTTGTTCCTTCCTTTAGATAAATA
CTCAAAATCCCCTTACAATAATGCAATTTCGAAGGGACCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32258.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis