Browse Element(s) Details


Os.52110.1.S1_at

Description gb:AK064741.1
DB_XREF= gi:32974759
TID=Os.52110.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D09, full insert sequence.
FL= gb:AK064741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3011011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30100Os.7160.1.S1_at11/117+17742340..17753618Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g30110Os.52110.1.S1_at11/117+17765848..17769687expressed protein
LOC_Os07g30120Os.27433.1.S1_at9/117+17770977..17774813hypothetical protein
LOC_Os07g30130Os.26708.1.S1_at11/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30130Os.53383.1.S1_x_at6/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52110.1.S1_at--1092--951Chr07:17767151..17767175 (25 bp)
AGGACCTGCACCTCGTTGGTACATA
LOC_Os07g30110
Os.52110.1.S1_at--915--9211Chr07:17767176..17767200 (25 bp)
TCCACTGAGGAGCTTGATTCGTTGT
LOC_Os07g30110
Os.52110.1.S1_at--293--2871Chr07:17768230..17768254 (25 bp)
AAGTGGCTTCATATGCGGACGGCAA
LOC_Os07g30110
Os.52110.1.S1_at--627--9091Chr07:17768255..17768279 (25 bp)
TGCTCATCTTGTTGCATGTCCAAAG
LOC_Os07g30110
Os.52110.1.S1_at--97--7631Chr07:17768858..17768877 (20 bp)
GGGAAAGCAATCCTTACTGTCCTTC
LOC_Os07g30110
Os.52110.1.S1_at--254--8051Chr07:17769444..17769468 (25 bp)
GGAGACCCGGATTGGGCATCATCGC
LOC_Os07g30110
Os.52110.1.S1_at--374--4971Chr07:17769459..17769483 (25 bp)
GCATCATCGCGTTTTCATACTTTCA
LOC_Os07g30110
Os.52110.1.S1_at--687--3271Chr07:17769487..17769511 (25 bp)
CAACAGTGAATGAAGGGTCTCCTCC
LOC_Os07g30110
Os.52110.1.S1_at--383--7811Chr07:17769502..17769526 (25 bp)
GGTCTCCTCCAAGCTTTATTTAGGT
LOC_Os07g30110
Os.52110.1.S1_at--262--1851Chr07:17769572..17769596 (25 bp)
ACGCATGCATTGAGCTTGTTTACTA
LOC_Os07g30110
Os.52110.1.S1_at--279--631Chr07:17769644..17769668 (25 bp)
ATGCTCTATATGCTACCCCTAAAAT
LOC_Os07g30110
Target Sequence 
AGGACCTGCACCTCGTTGGTACATATCCACTGAGGAGCTTGATTCGTTGTCATCATACATGAGAGGGAGGCTCACTCTGG
AGAAGGTTAACATTGCCATCAATGAAGTGGCTTCATATGCGGACGGCAATGCTCATCTTGTTGCATGTCCAAAGAAAAAG
TTATCAGAAGACACATGGGAGAAGGCACTGGAATTAAGGGACATTGCAGCAAGAGAGTCAGTTAAGGGGAGGCATTTCTT
CTTGGAAACTGATATAAAGGGACCGGGCTTAAAACTTGATACCACAGGGAAAGCAATCCTTACTGTCCTTCGTCATCTCG
GCCGCTTCCAGGAGACCCGGATTGGGCATCATCGCGTTTTCATACTTTCAAAACAACAGTGAATGAAGGGTCTCCTCCAA
GCTTTATTTAGGTGCTGGAGAATATAAAGTTTAATTTGGTGTTAGGCTGGAGATAGATACGCATGCATTGAGCTTGTTTA
CTAATTGCTATGCTGTAGTTTGTTGTATACAGGTCAGGGCAAGTACTATAATGCTCTATATGCTACCCCTAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis