Browse Element(s) Details


Os.53383.1.S1_x_at

Description gb:AK072361.1
DB_XREF= gi:32982384
TID=Os.53383.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063A05, full insert sequence.
FL= gb:AK072361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3200011/11expressed protein
LOC_Os07g301306/11P-type R2R3 Myb protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein
LOC_Os04g31984NANA4+18965481..18970377retrotransposon protein, putative, unclassified
LOC_Os04g32000Os.53383.1.S1_at11/114+18971208..18974400expressed protein
LOC_Os04g32000Os.53383.1.S1_x_at11/114+18971208..18974400expressed protein
LOC_Os04g32004NANA4+18977352..18977636hypothetical protein
LOC_Os04g32010Os.56217.1.S1_at11/114+18981733..18983917Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os04g32020Os.11872.1.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
LOC_Os04g32020Os.11872.2.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009416biological_processresponse to light stimulus
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010118biological_processstomatal movement
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53383.1.S1_x_at--514--7592Chr07:17778155..17778178 (24 bp)
GGGCTTTGACATGGTCTTCGTGCAA
LOC_Os07g30130
Os.53383.1.S1_x_at--1115--6853Chr07:17778236..17778260 (25 bp)
GTTTGTCTTACTTCAGGTTCACTGA
LOC_Os07g30130
Os.53383.1.S1_x_at--773--10051Chr04:18973963..18973987 (25 bp)
TAGTCTTGCACCTATCACTTGCTAA
LOC_Os04g32000
Os.53383.1.S1_x_at--347--731Chr04:18973990..18974014 (25 bp)
ATGTTGTAACCTTGCCTTGCACCTA
LOC_Os04g32000
Os.53383.1.S1_x_at--1082--9753Chr07:17778296..17778320 (25 bp)
TAATGTTGTAACCTTGCTCCTGTCA
LOC_Os07g30130
Os.53383.1.S1_x_at--694--3633Chr07:17778308..17778332 (25 bp)
CTTGCTCCTGTCACTTGATAGTATT
LOC_Os07g30130
Os.53383.1.S1_x_at--190--8411Chr04:18974134..18974158 (25 bp)
GGCCGGCCCTATTCTTTACATTATG
LOC_Os04g32000
Os.53383.1.S1_x_at--1050--4932Chr07:17778428..17778452 (25 bp)
GCATTGGACTATTGAGCCTGGTTGT
LOC_Os07g30130
Os.53383.1.S1_x_at--333--5933Chr04:18974198..18974222 (25 bp)
GAGCATGGCTGGAGTATCATCTGGA
LOC_Os04g32000
Os.53383.1.S1_x_at--757--8571Chr04:18974236..18974260 (25 bp)
TGGATTATTCACTTGGCTTTGTCTT
LOC_Os04g32000
Os.53383.1.S1_x_at--427--6153Chr07:17778563..17778676 (25 bp)
GAGGTCTTATTTTCTGATCTTATCC
LOC_Os07g30130
Target Sequence 
GGGCTTTGACATGGTCTTCGTGCAAGAATAAAATGCCATTTTGTGTTTGTCAACAAGTGTTATTTATTTTTTAATCAACA
ATTGTTTGTCTTACTTCAGGTTCACTGATCTAATGTTTTAGTCTTGCACCTATCACTTGCTAATAATGTTGTAACCTTGC
CTTGCACCTATCACTTGCTAATAATGTTGTAACCTTGCTCCTGTCACTTGATAGTATTTCAAATAATTTCCAATATTATT
TGTGCAGATTATATAAGGTCGCTTTAAGATTACCTTGTTCAGATTCTTCGGCCGGCCCTATTCTTTACATTATGCATTGG
ACTATTGAGCCTGGTTGTTTTTGGAGGACCAGGGAGCATGGCTGGAGTATCATCTGGAGGATAACCTGATGTGGATTATT
CACTTGGCTTTGTCTTGACAAATAATATATGAGTTATTGCTTGTAAGAGAGGTCAAGAGAGGTCTTATTTTCTGATCTTA
TCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53383.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis