Browse Element(s) Details


Os.7048.1.S1_at

Description gb:AK063224.1
DB_XREF= gi:32973242
TID=Os.7048.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E09, full insert sequence.
FL= gb:AK063224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3195010/11U6 snRNA-associated Sm-like protein LSm6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31900Os.11702.1.S1_at11/114+18918517..18926150CG-1 domain containing protein, expressed
LOC_Os04g31910OsAffx.27508.131.S1_s_at11/114+18926496..18929443expressed protein
LOC_Os04g31924Os.9481.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31924Os.54876.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31940Os.15102.1.S1_at11/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31940Os.20347.1.S1_at1/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein
LOC_Os04g31984NANA4+18965481..18970377retrotransposon protein, putative, unclassified
LOC_Os04g32000Os.53383.1.S1_at11/114+18971208..18974400expressed protein
LOC_Os04g32000Os.53383.1.S1_x_at11/114+18971208..18974400expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7048.1.S1_at--598--1791Chr04:18947448..18947468 (21 bp)
ACCGAGGTATTTTGGCTTGCCTGGA
LOC_Os04g31950
Os.7048.1.S1_at--510--391Chr04:18947187..18947211 (25 bp)
ATCAGCACTTCGAAGAGGACCCTTA
LOC_Os04g31950
Os.7048.1.S1_at--560--951Chr04:18947172..18947196 (25 bp)
AGGACCCTTACGGATGACGCATAGA
LOC_Os04g31950
Os.7048.1.S1_at--503--1611Chr04:18947104..18947128 (25 bp)
AGCTGATTGGTTGTGATCTCTCTCT
LOC_Os04g31950
Os.7048.1.S1_at--554--3531Chr04:18947075..18947099 (25 bp)
CATGCTCGTACCTGCTGTTTTGAGG
LOC_Os04g31950
Os.7048.1.S1_at--804--1551Chr04:18946991..18947015 (25 bp)
AGCTTTGCAAAGAACTTCCGGCCAA
LOC_Os04g31950
Os.7048.1.S1_at--1126--9051Chr04:18946956..18946980 (25 bp)
TGCATTTTGACTGTTTTCTCCTGAC
LOC_Os04g31950
Os.7048.1.S1_at--141--6571Chr04:18946927..18946951 (25 bp)
GATTCGGCTTTCTGCATGGCTGGAC
LOC_Os04g31950
Os.7048.1.S1_at--137--6351Chr04:18946897..18946921 (25 bp)
GATGCTGATATTGGCAGCCAGCGTT
LOC_Os04g31950
Os.7048.1.S1_at--522--3391Chr04:18946879..18946903 (25 bp)
CAGCGTTCCCCATGTGGATTGTGAA
LOC_Os04g31950
Os.7048.1.S1_at--717--811Chr04:18946855..18946879 (25 bp)
ATGGTGATCATCCACTATGGCTATA
NONE
Target Sequence 
ACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTC
AAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGA
CGCATAGATCGAGTGGAACAGAGTCGACTNNNNNNCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCT
CTGANCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATG
TAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAGANCTCCAGTTGCATTTTGACTGTTTTCTCCTGACTCCTGATTCG
GCTTTCTGCATGGCTGGACCGCTGGATGCTGATATTGGCAGCCAGCGTTCCCCATGTGGATTGTGAATGGTGATCATCCA
CTATGGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis