Browse Element(s) Details


Os.54876.1.S1_at

Description gb:AK106974.1
DB_XREF= gi:32992183
TID=Os.54876.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G11, full insert sequence.
FL= gb:AK106974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3192411/11nodulin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31900Os.11702.1.S1_at11/114+18918517..18926150CG-1 domain containing protein, expressed
LOC_Os04g31910OsAffx.27508.131.S1_s_at11/114+18926496..18929443expressed protein
LOC_Os04g31924Os.9481.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31924Os.54876.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31940Os.15102.1.S1_at11/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31940Os.20347.1.S1_at1/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54876.1.S1_at--436--191Chr04:18936665..18936689 (25 bp)
ATTTCTGGACCAGCGAAGCAGTGAT
LOC_Os04g31924
Os.54876.1.S1_at--507--7151Chr04:18936720..18936744 (25 bp)
GTCTTTGTCACTTTATGTTGGCCAT
LOC_Os04g31924
Os.54876.1.S1_at--1051--10831Chr04:18936737..18936761 (25 bp)
TTGGCCATATGCATCCCTTTTGTTT
LOC_Os04g31924
Os.54876.1.S1_at--780--10251Chr04:18936755..18936779 (25 bp)
TTTGTTTCTTCAGCTGTTAACCAGA
LOC_Os04g31924
Os.54876.1.S1_at--135--8551Chr04:18936806..18936830 (25 bp)
TGGAGGTTCATATCAATTCCGAAGT
LOC_Os04g31924
Os.54876.1.S1_at--955--10791Chr04:18936858..18936882 (25 bp)
TTGTAGCCAAACTCTCTTGATCTGC
LOC_Os04g31924
Os.54876.1.S1_at--458--7391Chr04:18936924..18936948 (25 bp)
GTGGTCAGGTTTGACTTCCTAAACT
LOC_Os04g31924
Os.54876.1.S1_at--53--6611Chr04:18936989..18937013 (25 bp)
GATTGTGCCACGTACAGTGCATGAG
LOC_Os04g31924
Os.54876.1.S1_at--639--10131Chr04:18937033..18937057 (25 bp)
TATGCACACAGCTTTGCCACATTGT
LOC_Os04g31924
Os.54876.1.S1_at--905--651Chr04:18937090..18937114 (25 bp)
ATGAATCTTCACCTTTATCCTCGTG
LOC_Os04g31924
Os.54876.1.S1_at--1004--7451Chr04:18937116..18937140 (25 bp)
GTGTCCACACAACATTGCCAGGTTT
LOC_Os04g31924
Target Sequence 
ATTTCTGGACCAGCGAAGCAGTGATGGTATATTCTTGATGTATTCTTATTTGGGTGTCTTTGTCACTTTATGTTGGCCAT
ATGCATCCCTTTTGTTTCTTCAGCTGTTAACCAGATACATTTCATAATGACATCAATGTAGTGGAGGTTCATATCAATTC
CGAAGTAACCTGTTGAGTGTTGGCATGTTGCTTTTGTAGCCAAACTCTCTTGATCTGCTTATATACAATTTTTTTTTCAT
CTTCTTTTCGGATGGTAAAGTGGTCAGGTTTGACTTCCTAAACTTAGCATGATGTGTCCATCCAAATTCCATGAAAGAGG
AAGTGATTGTGCCACGTACAGTGCATGAGTGCGTTATATTGTCATGAGTATGCACACAGCTTTGCCACATTGTGAATTTT
TATTGGAAAATCTGAATTTGAAACCATGAATCTTCACCTTTATCCTCGTGTGTGTCCACACAACATTGCCAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis