Browse Element(s) Details


Os.15102.1.S1_at

Description gb:AK063403.1
DB_XREF= gi:32973421
TID=Os.15102.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A05, full insert sequence.
FL= gb:AK063403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3194011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31900Os.11702.1.S1_at11/114+18918517..18926150CG-1 domain containing protein, expressed
LOC_Os04g31910OsAffx.27508.131.S1_s_at11/114+18926496..18929443expressed protein
LOC_Os04g31924Os.9481.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31924Os.54876.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31940Os.15102.1.S1_at11/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31940Os.20347.1.S1_at1/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein
LOC_Os04g31984NANA4+18965481..18970377retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15102.1.S1_at--714--7991Chr04:18945005..18945029 (25 bp)
GGATGTCTCAACTGTCAAATGCACT
LOC_Os04g31940
Os.15102.1.S1_at--495--5111Chr04:18945025..18945049 (25 bp)
GCACTTCACTGAACTCAACATTTGT
LOC_Os04g31940
Os.15102.1.S1_at--89--3671Chr04:18945076..18945100 (25 bp)
CTTATTTTTGGCTGATGACTTGGAC
LOC_Os04g31940
Os.15102.1.S1_at--1120--5671Chr04:18945092..18945116 (25 bp)
GACTTGGACAACTCTACCAGGGCAA
LOC_Os04g31940
Os.15102.1.S1_at--623--1211Chr04:18945223..18945247 (25 bp)
AGTTTTGGCAATTGACGAGGCGACC
LOC_Os04g31940
Os.15102.1.S1_at--1085--3211Chr04:18945247..18945271 (25 bp)
CAAGTGGTGCTTGCTGAGGCTATTA
LOC_Os04g31940
Os.15102.1.S1_at--1002--5311Chr04:18945305..18945329 (25 bp)
GAAGGTGCTACTTGTTTGTCACTCT
LOC_Os04g31940
Os.15102.1.S1_at--842--8731Chr04:18945321..18945345 (25 bp)
TGTCACTCTTTAAGGTACGGCGCTC
LOC_Os04g31940
Os.15102.1.S1_at--179--4811Chr04:18945342..18945366 (25 bp)
GCTCTGCATCCACAGCTGAATTTGA
LOC_Os04g31940
Os.15102.1.S1_at--30--8071Chr04:18945369..18945393 (25 bp)
GGAGAACCACTAGGCTTCCCCATGT
LOC_Os04g31940
Os.15102.1.S1_at--828--3491Chr04:18945389..18945413 (25 bp)
CATGTACCCGAGTTTGTGTACTGGT
LOC_Os04g31940
Target Sequence 
GGATGTCTCAACTGTCAAATGCACTTCACTGAACTCAACATTTGTTGGTCACTTAAGTTCTAGTATGTCATCTTATTTTT
GGCTGATGACTTGGACAACTCTACCAGGGCAAGCAGCTTATGTCGCAGAATTCTGACATAATTCTTAGGCATTTTCTAAC
ANTTTTGGTTTTACTGCAANTACGGATATCTTCCTGAGAGTAAAAGACTATTTGGAGNCCAGTTTTGGCAATTGACGAGG
CGACCAAGTGGTGCTTGCTGAGGCTATTAGTCAACGGAAGCTAAGAAGCCTCATGAATCGCTGAAGGTGCTACTTGTTTG
TCACTCTTTAAGGTACGGCGCTCTGCATCCACAGCTGAATTTGAGGGGAGAACCACTAGGCTTCCCCATGTACCCGAGTT
TGTGTACTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis