Browse Element(s) Details


Os.56343.1.S1_at

Description gb:AK109891.1
DB_XREF= gi:32995100
TID=Os.56343.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-E05, full insert sequence.
FL= gb:AK109891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3195011/11U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os07g086403/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31900Os.11702.1.S1_at11/114+18918517..18926150CG-1 domain containing protein, expressed
LOC_Os04g31910OsAffx.27508.131.S1_s_at11/114+18926496..18929443expressed protein
LOC_Os04g31924Os.9481.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31924Os.54876.1.S1_at11/114+18935170..18939679nodulin family protein, putative, expressed
LOC_Os04g31940Os.15102.1.S1_at11/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31940Os.20347.1.S1_at1/114+18942783..18945524DnaJ domain containing protein, expressed
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein
LOC_Os04g31984NANA4+18965481..18970377retrotransposon protein, putative, unclassified
LOC_Os04g32000Os.53383.1.S1_at11/114+18971208..18974400expressed protein
LOC_Os04g32000Os.53383.1.S1_x_at11/114+18971208..18974400expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56343.1.S1_at--460--4231Chr04:18948388..18948412 (25 bp)
CCGAGCGGATTGGTTCTGTGGCATA
LOC_Os04g31950
Os.56343.1.S1_at--134--8671Chr04:18948372..18948396 (25 bp)
TGTGGCATATCGTCTTCAGCTTCCT
LOC_Os04g31950
Os.56343.1.S1_at--789--9092Chr07:4452551..4452575 (25 bp)
TGCTCGCTTGCATGATGTGTTTCAC
LOC_Os07g08640
Os.56343.1.S1_at--1000--5411Chr04:18948306..18948330 (25 bp)
GAAGCCATTTTGTGGAACTCCGCCG
LOC_Os04g31950
Os.56343.1.S1_at--665--2171Chr04:18948252..18948276 (25 bp)
ACACGGCCAAGTGTGTTTGCAGCCT
LOC_Os04g31950
Os.56343.1.S1_at--764--1212Chr07:4452671..4452695 (25 bp)
AGTTACGCAGAGTCGATTGGCTCGT
LOC_Os07g08640
Os.56343.1.S1_at--512--2911Chr04:18948170..18948194 (25 bp)
AAGGATAAGCCTTCTGCCGAAGCTT
LOC_Os04g31950
Os.56343.1.S1_at--653--4512Chr07:4452738..4452762 (25 bp)
GCCGAAGCTTCATGGATGCCTTTGG
LOC_Os07g08640
Os.56343.1.S1_at--31--3131Chr04:18948127..18948151 (25 bp)
AATTTCGCACTCTTCATCCGGATTT
LOC_Os04g31950
Os.56343.1.S1_at--58--7931Chr04:18948054..18948078 (25 bp)
GGATTGCAATACAAGCGTCGCAGCA
LOC_Os04g31950
Os.56343.1.S1_at--504--10332Chr07:4452902..4452925 (24 bp)
TTTACTTCTGTTTTGATTCGGTTCA
NONE
Target Sequence 
CCGAGCGGATTGGTTCTGTGGCATATCGTCTTCAGCTTCCTCCGGGTGCTCGCTTGCATGATGTGTTTCACGTGAGGTTG
TTGAAGCCATTTTGTGGAACTCCGCCGGATTCTGTTCCACCGTTACCGCCCATTCAACACGGCCAAGTGTGTTTGCAGCC
TGCTGCAGTTACGCAGAGTCGATTGGCTCGTGGAGTTCGTCAAGTTCTTGTTCAGTGGAAGGATAAGCCTTCTGCCGAAG
CTTCATGGATGCCTTTGGATGAATTTCGCACTCTTCATCCGGATTTTCAGCTCGAGGACGAGCTGCTTCTCCAGGGGGGA
GAGATGTCATGTGGGGATTGCAATACAAGCGTCGCAGCAACAGGCGGGCGACGGCAAGGCGTGACGAGGAATAGTTTTTT
ACTTCTGTTTTGATTCGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis