Browse Element(s) Details


Os.53383.1.S1_at

Description gb:AK072361.1
DB_XREF= gi:32982384
TID=Os.53383.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063A05, full insert sequence.
FL= gb:AK072361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3200011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31950Os.56343.1.S1_at11/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31950Os.7048.1.S1_at10/114+18946855..18952183U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os04g31960Os.56217.1.S1_at4/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31960OsAffx.12073.1.S1_at1/114+18954687..18956676Acetolactate synthase III, chloroplast precursor, putative
LOC_Os04g31970OsAffx.3971.1.S1_at11/114+18961252..18961710hypothetical protein
LOC_Os04g31984NANA4+18965481..18970377retrotransposon protein, putative, unclassified
LOC_Os04g32000Os.53383.1.S1_at11/114+18971208..18974400expressed protein
LOC_Os04g32000Os.53383.1.S1_x_at11/114+18971208..18974400expressed protein
LOC_Os04g32004NANA4+18977352..18977636hypothetical protein
LOC_Os04g32010Os.56217.1.S1_at11/114+18981733..18983917Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os04g32020Os.11872.1.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
LOC_Os04g32020Os.11872.2.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53383.1.S1_at--348--731Chr04:18973990..18974014 (25 bp)
ATGTTGTAACCTTGCCTTGCACCTA
LOC_Os04g32000
Os.53383.1.S1_at--334--8811Chr04:18973991..18974015 (25 bp)
TGTTGTAACCTTGCCTTGCACCTAT
LOC_Os04g32000
Os.53383.1.S1_at--410--10811Chr04:18973993..18974017 (25 bp)
TTGTAACCTTGCCTTGCACCTATCA
LOC_Os04g32000
Os.53383.1.S1_at--820--7051Chr04:18973995..18974019 (25 bp)
GTAACCTTGCCTTGCACCTATCACT
LOC_Os04g32000
Os.53383.1.S1_at--971--2631Chr04:18973997..18974021 (25 bp)
AACCTTGCCTTGCACCTATCACTTG
LOC_Os04g32000
Os.53383.1.S1_at--370--3631Chr04:18974000..18974024 (25 bp)
CTTGCCTTGCACCTATCACTTGCTA
LOC_Os04g32000
Os.53383.1.S1_at--85--10431Chr04:18974131..18974155 (25 bp)
TTCGGCCGGCCCTATTCTTTACATT
LOC_Os04g32000
Os.53383.1.S1_at--189--8411Chr04:18974134..18974158 (25 bp)
GGCCGGCCCTATTCTTTACATTATG
LOC_Os04g32000
Os.53383.1.S1_at--595--4713Chr04:18974205..18974229 (25 bp)
GCTGGAGTATCATCTGGAGGATAAC
LOC_Os04g32000
Os.53383.1.S1_at--551--3893Chr04:18974206..18974230 (25 bp)
CTGGAGTATCATCTGGAGGATAACC
LOC_Os04g32000
Os.53383.1.S1_at--244--1331Chr04:18974292..18974316 (25 bp)
AGAGGTCAAGAGAGGTCTTATTTTC
LOC_Os04g32000
Target Sequence 
ATGTTGTAACCTTGCCTTGCACCTATCACTTGCTAATAATGTTGTAACCTTGCTCCTGTCACTTGATAGTATTTCAAATA
ATTTCCAATATTATTTGTGCAGATTATATAAGGTCGCTTTAAGATTACCTTGTTCAGATTCTTCGGCCGGCCCTATTCTT
TACATTATGCATTGGACTATTGAGCCTGGTTGTTTTTGGAGGACCAGGGAGCATGGCTGGAGTATCATCTGGAGGATAAC
CTGATGTGGATTATTCACTTGGCTTTGTCTTGACAAATAATATATGAGTTATTGCTTGTAAGAGAGGTCAAGAGAGGTCT
TATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis