Browse Element(s) Details


Os.51874.1.S1_at

Description gb:AK064144.1
DB_XREF= gi:32974162
TID=Os.51874.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C02, full insert sequence.
FL= gb:AK064144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3210011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32080Os.8449.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32080Os.56903.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32090Os.21287.1.S1_at10/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.31771.2.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.16899.1.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32100Os.51874.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100Os.25010.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32110OsAffx.6005.1.S1_at10/118+19787693..19790532hypothetical protein
LOC_Os08g32120Os.12379.1.S1_at9/118+19795820..19796465expressed protein
LOC_Os08g32130Os.24686.1.A1_at7/118+19804317..19807591DnaJ domain containing protein, expressed
LOC_Os08g32140NANA8+19809907..19812014retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51874.1.S1_at--376--7851Chr08:19782932..19782956 (25 bp)
GGTAGTGGGACTACTGCTGTCACTG
LOC_Os08g32100
Os.51874.1.S1_at--928--8111Chr08:19782925..19782949 (25 bp)
GGACTACTGCTGTCACTGGAAATGA
LOC_Os08g32100
Os.51874.1.S1_at--736--4731Chr08:19782917..19782941 (25 bp)
GCTGTCACTGGAAATGAATTGTCAA
LOC_Os08g32100
Os.51874.1.S1_at--430--3171Chr08:19782901..19782925 (25 bp)
AATTGTCAAAGCCTGTTTCTGATGA
LOC_Os08g32100
Os.51874.1.S1_at--934--8191Chr08:19782801..19782825 (25 bp)
GGAAGATTCTAAGGCTGATAAGGAT
LOC_Os08g32100
Os.51874.1.S1_at--285--6771Chr08:19782741..19782765 (25 bp)
GTTAAAGACTAGACCACCACCGCCA
LOC_Os08g32100
Os.51874.1.S1_at--755--8971Chr08:19782705..19782729 (25 bp)
TGAACAATCTGCTGACATCTCTTCC
LOC_Os08g32100
Os.51874.1.S1_at--676--4751Chr08:19782695..19782719 (25 bp)
GCTGACATCTCTTCCAAACACAAGA
LOC_Os08g32100
Os.51874.1.S1_at--973--6571Chr08:19782556..19782580 (25 bp)
GATTCTGAAGATAAGAGTGGCACTG
LOC_Os08g32100
Os.51874.1.S1_at--1153--1411Chr08:19782494..19782518 (25 bp)
AGAAACTGGGTCTCCTGATAAGAGG
LOC_Os08g32100
Os.51874.1.S1_at--187--2051Chr08:19782425..19782449 (25 bp)
ACTTGAAAGGCATGAACGCGAGCGA
LOC_Os08g32100
Target Sequence 
GGTAGTGGGACTACTGCTGTCACTGGAAATGAATTGTCAAAGCCTGTTTCTGATGAAACAGAGACAGGGACAGGAGATGC
TGGTGATAAGGGCAATGAAGAAAATCCTAAGAAATTTGGGATTGTTACAGAGGAAGATTCTAAGGCTGATAAGGATGTTG
CTGAAAAAATTAGTAGTATGATTGAAGAGTGGTTAAAGACTAGACCACCACCGCCACCTCCCCCAGTTGAACAATCTGCT
GACATCTCTTCCAAACACAAGAATGGAGAGTATAGTGTAGATGTGACAAAAAATGATTCTGAAGATAAGAGTGGCACTGG
AAGTGATAAAAGGGTAGTTAATGAGACCGAAAGGATAGAAACTGGGTCTCCTGATAAGAGGAAGGAGAGAGAGCGTGATA
AGGAGAAGCGGGACAAGGATAAAGAACTTGAAAGGCATGAACGCGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis