Browse Element(s) Details


Os.24686.1.A1_at

Description gb:AK062863.1
DB_XREF= gi:32972881
TID=Os.24686.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-B06, full insert sequence.
FL= gb:AK062863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g321307/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32100Os.51874.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100Os.25010.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32110OsAffx.6005.1.S1_at10/118+19787693..19790532hypothetical protein
LOC_Os08g32120Os.12379.1.S1_at9/118+19795820..19796465expressed protein
LOC_Os08g32130Os.24686.1.A1_at7/118+19804317..19807591DnaJ domain containing protein, expressed
LOC_Os08g32140NANA8+19809907..19812014retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32150NANA8+19813505..19814668retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32160Os.9563.1.S1_at11/118+19817711..19819546oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g32170Os.10186.1.S1_s_at11/118+19821914..19823324oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g32180NANA8+19825936..19827549hypothetical protein
LOC_Os08g32190NANA8+19829684..19832420hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0005739cellular_componentmitochondrion
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24686.1.A1_at--930--9751Chr08:19807021..19807045 (25 bp)
TAAGAACCTGGCAACAGGGCGGCGC
LOC_Os08g32130
Os.24686.1.A1_at--322--10671Chr08:19807089..19807113 (25 bp)
TTCCACTCCGTAGTGAATTCATAGC
LOC_Os08g32130
Os.24686.1.A1_at--1151--111Chr08:19807105..19807129 (25 bp)
ATTCATAGCTACCTTTATTCCCTTC
LOC_Os08g32130
Os.24686.1.A1_at--795--6851Chr08:19807136..19807160 (25 bp)
GTTTGTAAGATGTATCCCTTGTTGA
LOC_Os08g32130
Os.24686.1.A1_at--1053--7051Chr08:19807258..19807282 (25 bp)
GTAAGCATGGACTACATTCCCTTCA
LOC_Os08g32130
Os.24686.1.A1_at--785--91NONE
ATTCCCTTCAAATCTCTCTGTCTAA
NONE
Os.24686.1.A1_at--1035--3051NONE
AATCTCTCTGTCTAAACTCAACTTT
NONE
Os.24686.1.A1_at--337--8151Chr08:19807376..19807400 (25 bp)
GGAAATGTAGTTCACACCTATACTT
LOC_Os08g32130
Os.24686.1.A1_at--610--6811NONE
GTTTCGGTTTTCATTCATTCGATGG
NONE
Os.24686.1.A1_at--518--8731NONE
TGTAAACTAGAAACCCCTATCCTGG
NONE
Os.24686.1.A1_at--963--4291Chr08:19807507..19807530 (24 bp)
CCTATCCTGGTGGAAGCCTTGGAGT
LOC_Os08g32130
Target Sequence 
TAAGAACCTGGCAACAGGGCGGCGCTATTGCNTTTTTTTTTTGGTTCCNAATCAAATCGATGCTTTTTTTCCACTCCGTA
GTGAATTCATAGCTACCTTTATTCCCTTCTTTTAGGTTTGTAAGATGTATCCCTTGTTGAGAAAACAAACAGGGATATCT
GTGGCGAAAAAGCGAAAACCTATGAAAATCGGAACTAAAAGTTTTCTAAATTATTGAAAAAATTACTAGAAATATGTGTA
AGCATGGACTACATTCCCTTCAAATCTCTCTGTCTAAACTCAACTTTATTTGGAAGGAAAAGAAGACAAAATTTTGGTGA
ATAGTAGGAAGCTGGATTTGAACTTGAGATTTGGTGGAAATGTAGTTCACACCTATACTTATCTCTAGTAAATTTTCCAT
GAATTTAGAAAAAAATTCAGTTTCGGTTTTCATTCATTCGATGGTTTTCATTGGATATTCCTCCAAAAATGTAAACTAGA
AACCCCTATCCTGGTGGAAGCCTTGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24686.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis