Browse Element(s) Details


Os.10186.1.S1_s_at

Description gb:CR283653
DB_XREF= gi:44670219
DB_XREF=CR283653
CLONE=p631c01p3
TID=Os.10186.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10186 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T01388 (A.thaliana) T01388 oxidoreductase homolog T4I9.7 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3217011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32130Os.24686.1.A1_at7/118+19804317..19807591DnaJ domain containing protein, expressed
LOC_Os08g32140NANA8+19809907..19812014retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32150NANA8+19813505..19814668retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32160Os.9563.1.S1_at11/118+19817711..19819546oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g32170Os.10186.1.S1_s_at11/118+19821914..19823324oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g32180NANA8+19825936..19827549hypothetical protein
LOC_Os08g32190NANA8+19829684..19832420hypothetical protein
LOC_Os08g32200NANA8+19834372..19834668hypothetical protein
LOC_Os08g32210OsAffx.20293.1.S1_at1/118+19835714..19837346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32210OsAffx.20293.2.S1_at1/118+19835714..19837346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32220NANA8+19839898..19841572hypothetical protein
LOC_Os08g32230NANA8+19842028..19842942retrotransposon protein, putative, unclassified
LOC_Os08g32240OsAffx.22699.1.S1_x_at4/118+19843492..19845685retrotransposon protein, putative, unclassified
LOC_Os08g32250NANA8+19846331..19848895retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019761biological_processglucosinolate biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10186.1.S1_s_at--903--5871Chr08:19822344..19822368 (25 bp)
GAGCGGTACTGCGTGCTGGTCGGCA
LOC_Os08g32170
Os.10186.1.S1_s_at--538--3931Chr08:19822235..19822259 (25 bp)
CGGAGGAGTTCATCCAGTTCCGCTA
LOC_Os08g32170
Os.10186.1.S1_s_at--414--571Chr08:19822224..19822248 (25 bp)
ATCCAGTTCCGCTACTCGGAGGAAG
LOC_Os08g32170
Os.10186.1.S1_s_at--1143--8191Chr08:19822204..19822228 (25 bp)
GGAAGGCCGCAAATTCAGCGACCCA
LOC_Os08g32170
Os.10186.1.S1_s_at--65--3151Chr08:19822193..19822217 (25 bp)
AATTCAGCGACCCACTCAAGGCGTT
LOC_Os08g32170
Os.10186.1.S1_s_at--788--4031Chr08:19822172..19822196 (25 bp)
CGTTCTGCGGAGTAAACGCTACAGA
LOC_Os08g32170
Os.10186.1.S1_s_at--638--2371Chr08:19822159..19822183 (25 bp)
AAACGCTACAGAATGATATCGCACA
LOC_Os08g32170
Os.10186.1.S1_s_at--329--4851Chr08:19822155..19822179 (25 bp)
GCTACAGAATGATATCGCACAGATG
LOC_Os08g32170
Os.10186.1.S1_s_at--1032--5111Chr08:19822139..19822163 (25 bp)
GCACAGATGTAATGATAGCGTTCGA
LOC_Os08g32170
Os.10186.1.S1_s_at--633--6071Chr08:19821992..19822016 (25 bp)
GAGTATTTATAATCAATCGTCTTCA
LOC_Os08g32170
Os.10186.1.S1_s_at--454--6651Chr08:19821966..19821990 (25 bp)
GTTGATTCTGAACTTAGCTTATGAG
LOC_Os08g32170
Target Sequence 
GAGCGGTACTGCGTGCTGGTCGGCANCCGGAGCAAGGACGGCGCGGTGCTGAGCGCCATGGACGAGCTCGTCGACGGCGA
GCACCCGCTGGCGTACAGGCCGTGCAAGGCGGAGGAGTTCATCCAGTTCCGCTACTCGGAGGAAGGCCGCAAATTCAGCG
ACCCACTCAAGGCGTTCTGCGGAGTAAACGCTACAGAATGATATCGCACAGATGTAATGATAGCGTTCGAATAANTGTGA
CAGTTAATTAGTCCNTCCGTCCNAAAATATAGCAACTTTATACTGGATNGGACACGTATACTGGATGTGACANATCTTAT
TAGTATAAATTTGCTATATTTTGAGATGGAGGGAGTATTTATAATCAATCGTCTTCANGTTGATTCTGAACTTAGCTTAT
GAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10186.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis