Browse Element(s) Details


OsAffx.6005.1.S1_at

Description tigr:9636.m03208
TID=OsAffx.6005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3211010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32090Os.21287.1.S1_at10/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.31771.2.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.16899.1.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32100Os.51874.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100Os.25010.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32110OsAffx.6005.1.S1_at10/118+19787693..19790532hypothetical protein
LOC_Os08g32120Os.12379.1.S1_at9/118+19795820..19796465expressed protein
LOC_Os08g32130Os.24686.1.A1_at7/118+19804317..19807591DnaJ domain containing protein, expressed
LOC_Os08g32140NANA8+19809907..19812014retrotransposon, putative, centromere-specific, expressed
LOC_Os08g32150NANA8+19813505..19814668retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6005.1.S1_at--798--4711NONE
GCTGGACGACGTGCGCTATGATGAC
NONE
OsAffx.6005.1.S1_at--748--8931Chr08:19789900..19789924 (25 bp)
TGACGATTCCAGCACAAGTGGCAAT
LOC_Os08g32110
OsAffx.6005.1.S1_at--851--2871Chr08:19789915..19789939 (25 bp)
AAGTGGCAATGCTAATTACAAGTGT
LOC_Os08g32110
OsAffx.6005.1.S1_at--511--2771Chr08:19789943..19789967 (25 bp)
AAGAGAAACCATCATTTAGGAGCAT
LOC_Os08g32110
OsAffx.6005.1.S1_at--532--8151Chr08:19790145..19790169 (25 bp)
GGAAACTCGCATGGATCTCGTTGGA
LOC_Os08g32110
OsAffx.6005.1.S1_at--22--7911Chr08:19790175..19790199 (25 bp)
GGTTGTTAGGGAGGTGTATCTCACC
LOC_Os08g32110
OsAffx.6005.1.S1_at--829--8811Chr08:19790211..19790235 (25 bp)
TGTTGGAGCCAGATCTTGTCGGAGA
LOC_Os08g32110
OsAffx.6005.1.S1_at--18--8351Chr08:19790289..19790313 (25 bp)
GGCTGTTGAGTACAGATCTCACCGT
LOC_Os08g32110
OsAffx.6005.1.S1_at--26--5271Chr08:19790317..19790341 (25 bp)
GAAGGCCGTCGAGGGAAGATCTTAT
LOC_Os08g32110
OsAffx.6005.1.S1_at--630--291Chr08:19790374..19790398 (25 bp)
ATAGAGGAGGTCATCGGTGCACATA
LOC_Os08g32110
OsAffx.6005.1.S1_at--534--9611Chr08:19790384..19790408 (25 bp)
TCATCGGTGCACATATTATCGGAAA
LOC_Os08g32110
Target Sequence 
GCTGGACGACGTGCGCTATGATGACGATTCCAGCACAAGTGGCAATGCTAATTACAAGTGTGAGAAGAGAAACCATCATT
TAGGAGCATGGGAGGAAACTCGCATGGATCTCGTTGGAGAGGAGGTTGTTAGGGAGGTGTATCTCACCAAGGGGAAGGCT
GTTGGAGCCAGATCTTGTCGGAGAGTATGTCGGGGGCAAATCTTCTTGCCGGGGGGTGGGGGTGGGGGTGGGGGGGAGGC
TGTTGAGTACAGATCTCACCGTAGGGAAGGCCGTCGAGGGAAGATCTTATTAGATAGGACAGTTATAGGGGCAGATCTAG
TCATAGAGGAGGTCATCGGTGCACATATTATCGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis