Browse Element(s) Details


Os.25010.1.S1_at

Description gb:AK105675.1
DB_XREF= gi:32990884
TID=Os.25010.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A11, full insert sequence.
FL= gb:AK105675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3210011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32080Os.8449.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32080Os.56903.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32090Os.21287.1.S1_at10/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.31771.2.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.16899.1.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32100Os.51874.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100Os.25010.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32110OsAffx.6005.1.S1_at10/118+19787693..19790532hypothetical protein
LOC_Os08g32120Os.12379.1.S1_at9/118+19795820..19796465expressed protein
LOC_Os08g32130Os.24686.1.A1_at7/118+19804317..19807591DnaJ domain containing protein, expressed
LOC_Os08g32140NANA8+19809907..19812014retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25010.1.S1_at--537--131Chr08:19781292..19781316 (25 bp)
ATTAATTGACATGATTCCGAGGACA
LOC_Os08g32100
Os.25010.1.S1_at--806--8191Chr08:19781265..19781289 (25 bp)
GGAAGAGCTTTTTGCCTATGATATT
LOC_Os08g32100
Os.25010.1.S1_at--750--5271Chr08:19780711..19780735 (25 bp)
GAATGAGGCCCTGGATTGCAAAGAA
LOC_Os08g32100
Os.25010.1.S1_at--204--10851Chr08:19780652..19780676 (25 bp)
TTGGTGGATTACATCGTCTCATGCA
LOC_Os08g32100
Os.25010.1.S1_at--933--9031Chr08:19780631..19780655 (25 bp)
TGCACCAAAGACCATGTCCAGGCAT
LOC_Os08g32100
Os.25010.1.S1_at--554--8071Chr08:19780596..19780620 (25 bp)
GGAGCTTCTACAGTCAATCCTGGAC
LOC_Os08g32100
Os.25010.1.S1_at--375--2991Chr08:19780581..19780605 (25 bp)
AATCCTGGACGTTGAAGCTGAAATG
LOC_Os08g32100
Os.25010.1.S1_at--1007--5871Chr08:19780471..19780495 (25 bp)
GAGCGATTGCTGTTATTGCATTTTG
LOC_Os08g32100
Os.25010.1.S1_at--152--8831Chr08:19780448..19780472 (25 bp)
TGATTTACTAGTTCCACTGCCAGCT
LOC_Os08g32100
Os.25010.1.S1_at--1111--9191Chr08:19780431..19780455 (25 bp)
TGCCAGCTCGCTTGCAGGCTAATAG
LOC_Os08g32100
Os.25010.1.S1_at--814--9871Chr08:19780383..19780407 (25 bp)
TACATCGATCTTGACTCCGGATTTT
LOC_Os08g32100
Target Sequence 
ATTAATTGACATGATTCCGAGGACAAAGGAAGAGCTTTTTGCCTATGATATTAATTGGGCGATATATGACAAGCATGAGT
TGCATGAGAGAATGAGGCCCTGGATTGCAAAGAAGATTATTGAATTTCTGGGTGAGGAAGAATCAACTTTGGTGGATTAC
ATCGTCTCATGCACCAAAGACCATGTCCAGGCATCAAAAATGTTGGAGCTTCTACAGTCAATCCTGGACGTTGAAGCTGA
AATGTTTGTCCTTAAGATGTGGAGGATGCTTATATTTGAGATCAAGAAAGTCGAAACAGGACTATCAGGGAGAGCAAAGG
CATGATGTTGAGCGATTGCTGTTATTGCATTTTGATTTACTAGTTCCACTGCCAGCTCGCTTGCAGGCTAATAGTGTAAG
AATACTCAGCATCTAAATACATCGATCTTGACTCCGGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis