Browse Element(s) Details


Os.8449.1.S1_at

Description gb:CB657712
DB_XREF= gi:29661437
DB_XREF=OSJNEc13E03.r
CLONE=OSJNEc13E03
TID=Os.8449.1
CNT=39
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.8449 (NCBI UniGene Cluster)
UG_TITLE=Homeodomain leucine zipper protein (Oshox5) mRNA, complete cds
FL= gb:AF145729.1 gb:AK101569.1 gb:AK100634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3208011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32010OsAffx.29460.1.S1_at10/118+19725548..19726611hypothetical protein
LOC_Os08g32020Os.25754.2.S1_x_at2/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32020Os.53479.1.S1_x_at1/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32030OsAffx.20387.1.S1_x_at1/118+19733568..19736501transposon protein, putative, unclassified
LOC_Os08g32040NANA8+19736756..19737622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32050NANA8+19738574..19739692hypothetical protein
LOC_Os08g32060OsAffx.29461.1.S1_at11/118+19742427..19744856U-box domain containing protein, expressed
LOC_Os08g32070NANA8+19748621..19749139amino acid transporter, putative
LOC_Os08g32080Os.8449.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32080Os.56903.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32090Os.21287.1.S1_at10/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.31771.2.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.16899.1.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32100Os.51874.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100Os.25010.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009653biological_processmorphogenesis
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8449.1.S1_at--1119--711Chr08:19751806..19751830 (25 bp)
ATGATCTTGTGAGCAGCGGCGGCAC
LOC_Os08g32080
Os.8449.1.S1_at--356--4231Chr08:19751755..19751779 (25 bp)
CCGTGGTGGTCTTCGACGTCACCGA
LOC_Os08g32080
Os.8449.1.S1_at--538--3751Chr08:19751714..19751738 (25 bp)
CTCAGCTGCGAGTCGGCGTACTTCG
LOC_Os08g32080
Os.8449.1.S1_at--399--8131Chr08:19751653..19751677 (25 bp)
GGCACTACGCCCTCTCGTCGGAGGA
LOC_Os08g32080
Os.8449.1.S1_at--79--1811Chr08:19751486..19751510 (25 bp)
ACCGCCTGGTTCTGGAGCTGATCGA
LOC_Os08g32080
Os.8449.1.S1_at--24--8551Chr08:19751453..19751477 (25 bp)
TGGAGCATTGGAGCCATGCTATCAA
LOC_Os08g32080
Os.8449.1.S1_at--306--3071Chr08:19751418..19751442 (25 bp)
AATCAAATGACCTTGAGACCCTCCT
LOC_Os08g32080
Os.8449.1.S1_at--981--10271Chr08:19751380..19751404 (25 bp)
TTTGCCCTATTTTTAATCGCTGTTA
LOC_Os08g32080
Os.8449.1.S1_at--30--5211Chr08:19751341..19751365 (25 bp)
GCAATTAAAGTGTACGTGTTTTGTC
LOC_Os08g32080
Os.8449.1.S1_at--1126--10391Chr08:19751323..19751347 (25 bp)
TTTTGTCGTAAGTTGTGTTTGTTCA
LOC_Os08g32080
Os.8449.1.S1_at--887--5311Chr08:19751285..19751309 (25 bp)
GAAGGTGTCATGTATTCATACACGA
LOC_Os08g32080
Target Sequence 
ATGATCTTGTGAGCAGCGGCGGCACCAACGACGACGGCGATGGCGGCGGCGCGGCCGTGGTGGTCTTCGACGTCACCGAG
GGCGCCAACGACCGCCTCAGCTGCGAGTCGGCGTACTTCGCCGACGCCGCGGAGGCGTACGAGCGCGACTGCGCCGGGCA
CTACGCCCTCTCGTCGGAGGAGGAGGACGGCGGCGCGGTCAGCGACGAGGGCTGCAGCTTCGACCTCCCCGACGCCGCCG
CNGCCGCCGCCGCCNNNATGTTCGGCGCCGCCGGAGTTGTGCACCACGACGCCGCNGACGACGAGGAGGCGCAGCTCGGC
AGCTGGACCGCCTGGTTCTGGAGCTGATCGATGGAAGCATGGAGCATTGGAGCCATGCTATCAATGAATGAATGAATCAA
ATGACCTTGAGACCCTCCTCTCCGTCCTTTCTTTTGCCCTATTTTTAATCGCTGTTATATGTTAATTATGTGCAATTAAA
GTGTACGTGTTTTGTCGTAAGTTGTGTTTGTTCAAATTGTATGTTTTGAAGGTGTCATGTATTCATACACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis