Browse Element(s) Details


Os.20810.4.S1_at

Description gb:CB665620
DB_XREF= gi:29669345
DB_XREF=OSJNEd12C09.r
CLONE=OSJNEd12C09
TID=Os.20810.4
CNT=3
FEA=RNA
TIER=ConsEnd
STK=1
UG=Os.20810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1143G03.11 (B1143G03.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g319103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31870OsAffx.17282.1.S1_at11/118+19624234..19627960Cell division cycle protein 48 homolog, putative
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein
LOC_Os08g31890NANA8+19633324..19634571hypothetical protein
LOC_Os08g31900OsAffx.17283.1.S1_at11/118+19637698..19639363hypothetical protein
LOC_Os08g31900OsAffx.26378.1.S1_at2/118+19637698..19639363hypothetical protein
LOC_Os08g31910Os.20810.4.S1_at3/118+19642384..19648692expressed protein
LOC_Os08g31910OsAffx.8676.1.S1_at1/118+19642384..19648692expressed protein
LOC_Os08g31910Os.20810.2.S1_x_at1/118+19642384..19648692expressed protein
LOC_Os08g31920Os.20810.2.S1_x_at10/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31920Os.20810.2.S1_at8/118+19654435..19656697retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g31930Os.54248.1.S1_at11/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31930Os.32811.1.S1_at3/118+19663607..19668320BRCA1 C Terminus domain containing protein, expressed
LOC_Os08g31940Os.52322.1.S1_at11/118+19671302..19675908expressed protein
LOC_Os08g31940Os.53351.1.S1_x_at10/118+19671302..19675908expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20810.4.S1_at--588--4511Chr08:19642810..19642834 (25 bp)
GCCGACAAACTCTGGCGTGGCAGGT
LOC_Os08g31910
Os.20810.4.S1_at--315--8151NONE
GGACAAATTTGGGTGCTCCCTGCTG
NONE
Os.20810.4.S1_at--510--10851NONE
TTGGGTGCTCCCTGCTGCTTGAGAG
NONE
Os.20810.4.S1_at--43--3851Chr08:19642635..19642659 (25 bp)
CTGCTTGAGAGCTTCGTGCTCAGGA
LOC_Os08g31910
Os.20810.4.S1_at--597--8251NONE
GGCAGCGTTGCACTCCCCTGTGGTT
NONE
Os.20810.4.S1_at--626--8651NONE
TGTGGTTTCAGGCACCCCAGCAAGA
NONE
Os.20810.4.S1_at--554--1791NONE
ACCCCAGCAAGATTACACCCAAATG
NONE
Os.20810.4.S1_at--682--3351NONE
CACCCAAATGGGTATGATCAAACGA
NONE
Os.20810.4.S1_at--576--6471Chr08:19642466..19642490 (25 bp)
GATATCGTGTCATCATAATAGGTTA
LOC_Os08g31910
Os.20810.4.S1_at--212--6111NONE
GAGTCGTTACATATGCCAATATCTG
NONE
Os.20810.4.S1_at--603--4391NONE
GCCAATATCTGTACCAGTTGTTTAA
NONE
Target Sequence 
GCCGACAAACTCTGGCGTGGCAGGTGGAGTTGGGCTGGACATGGTGGTGTGGGAGAAGATGAAGTGGGAGCTGGAGAGAG
GAGGGTGGGTCCCCGGTAATGGCGACGTGGAGAGTATCGAGAGGGTGGAGAGGGGTGAGGCGGCGGGTCAGTGGGACAAA
TTTGGGTGCTCCCTGCTGCTTGAGAGCTTCGTGCTCAGGAGGATGGACGGCAGCGTTGCACTCCCCTGTGGTTTCAGGCA
CCCCAGCAAGATTACACCCAAATGGGTATGATCAAACGATGTAAGTAATACTGTAACTATCGAATTTTAATTATCTCTGT
TAATTTTTAAAATCTGGAGATATTGATATCGTGTCATCATAATAGGTTAAAGAGAGTCGTTACATATGCCAATATCTGTA
CCAGTTGTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20810.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis