Browse Element(s) Details


Os.6288.1.S1_at

Description gb:AK106356.1
DB_XREF= gi:32991565
TID=Os.6288.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A06, full insert sequence.
FL= gb:AK106356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3185011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein
LOC_Os08g31840Os.15674.1.S1_at8/118+19606824..19611657TBC domain containing protein, expressed
LOC_Os08g31850Os.6288.1.S1_at11/118+19612719..19614221expressed protein
LOC_Os08g31860Os.30528.1.S1_at11/118+19614600..19615993expressed protein
LOC_Os08g31870OsAffx.17282.1.S1_at11/118+19624234..19627960Cell division cycle protein 48 homolog, putative
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein
LOC_Os08g31890NANA8+19633324..19634571hypothetical protein
LOC_Os08g31900OsAffx.17283.1.S1_at11/118+19637698..19639363hypothetical protein
LOC_Os08g31900OsAffx.26378.1.S1_at2/118+19637698..19639363hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6288.1.S1_at--169--3991Chr08:19613824..19613848 (25 bp)
CGTCGACTTTGTGCACTTCAACAAG
LOC_Os08g31850
Os.6288.1.S1_at--452--10251Chr08:19613831..19613855 (25 bp)
TTTGTGCACTTCAACAAGGCCAGGG
LOC_Os08g31850
Os.6288.1.S1_at--762--7031Chr08:19613866..19613890 (25 bp)
GTAAATTGTAATCGTGTCACTCTGT
LOC_Os08g31850
Os.6288.1.S1_at--1126--7091Chr08:19613881..19613905 (25 bp)
GTCACTCTGTCACTGTCAGGTTATA
LOC_Os08g31850
Os.6288.1.S1_at--1062--7871Chr08:19613899..19613923 (25 bp)
GGTTATACCTATCAAATGCACAGTT
LOC_Os08g31850
Os.6288.1.S1_at--359--5111Chr08:19613916..19613940 (25 bp)
GCACAGTTGCGAATCTTCAGGTTAA
LOC_Os08g31850
Os.6288.1.S1_at--986--10431Chr08:19614105..19614129 (25 bp)
TTATGGTTTGTCAATCACCTTGCTT
LOC_Os08g31850
Os.6288.1.S1_at--159--10771Chr08:19614129..19614153 (25 bp)
TTGAGCTTTCGCCTTGGTATGTACT
LOC_Os08g31850
Os.6288.1.S1_at--322--7011Chr08:19614149..19614173 (25 bp)
GTACTCCGTACTATGTATGTGCAAA
LOC_Os08g31850
Os.6288.1.S1_at--176--9791Chr08:19614182..19614206 (25 bp)
TAAGCACTTGAATGGGAAACTGTTT
LOC_Os08g31850
Os.6288.1.S1_at--1036--5531Chr08:19614197..19614221 (25 bp)
GAAACTGTTTTATTCACCTGGATGG
LOC_Os08g31850
Target Sequence 
CGTCGACTTTGTGCACTTCAACAAGGCCAGGGAGAAGCTGGTGTAAATTGTAATCGTGTCACTCTGTCACTGTCAGGTTA
TACCTATCAAATGCACAGTTGCGAATCTTCAGGTTAAATCCTTCAAAAACCATAAAAAGGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGCGATTTGTAATGATTT
TTTTTTATCAACTCTGTGAGACAGTGGAGAAGATGTATTTGTTATGGTTTGTCAATCACCTTGCTTTGAGCTTTCGCCTT
GGTATGTACTCCGTACTATGTATGTGCAAATTACGTAGTAAGCACTTGAATGGGAAACTGTTTTATTCACCTGGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis