Browse Element(s) Details


Os.36859.1.S1_at

Description gb:AK062505.1
DB_XREF= gi:32972523
TID=Os.36859.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.36859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-B06, full insert sequence.
FL= gb:AK062505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3183011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31790OsAffx.16833.2.S1_at9/118+19578315..19580035hypothetical protein
LOC_Os08g31790OsAffx.16833.1.S1_x_at1/118+19578315..19580035hypothetical protein
LOC_Os08g31800Os.24903.1.A1_at10/118+19582695..19586834NB-ARC domain containing protein, expressed
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein
LOC_Os08g31840Os.15674.1.S1_at8/118+19606824..19611657TBC domain containing protein, expressed
LOC_Os08g31850Os.6288.1.S1_at11/118+19612719..19614221expressed protein
LOC_Os08g31860Os.30528.1.S1_at11/118+19614600..19615993expressed protein
LOC_Os08g31870OsAffx.17282.1.S1_at11/118+19624234..19627960Cell division cycle protein 48 homolog, putative
LOC_Os08g31880Os.20810.2.S1_x_at1/118+19630156..19631385hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36859.1.S1_at--105--7191Chr08:19606050..19606070 (21 bp)
GTCGTCCCGTAGCTAAGTGGTGATT
LOC_Os08g31830
Os.36859.1.S1_at--852--7831Chr08:19603457..19603481 (25 bp)
GGTACAACCGCGGAACTACTTGCTT
LOC_Os08g31830
Os.36859.1.S1_at--121--2031Chr08:19603443..19603467 (25 bp)
ACTACTTGCTTCTGGCTTGTCACGC
LOC_Os08g31830
Os.36859.1.S1_at--948--10791Chr08:19603427..19603451 (25 bp)
TTGTCACGCCTCCAACGAAAGCGTT
LOC_Os08g31830
Os.36859.1.S1_at--1153--2651Chr08:19603409..19603433 (25 bp)
AAGCGTTCAGTTATATCAGTTCTCA
LOC_Os08g31830
Os.36859.1.S1_at--224--251Chr08:19603397..19603421 (25 bp)
ATATCAGTTCTCACGCTGGGCGAGA
LOC_Os08g31830
Os.36859.1.S1_at--1013--6311Chr08:19602997..19603021 (25 bp)
GATGAAGTCTCTTGCTCAATAAGTA
LOC_Os08g31830
Os.36859.1.S1_at--829--9771Chr08:19602978..19603002 (25 bp)
TAAGTAAAGCTTCGTTTCCTGGATT
LOC_Os08g31830
Os.36859.1.S1_at--141--10291Chr08:19602964..19602988 (25 bp)
TTTCCTGGATTTCTGTAACGCTTTA
LOC_Os08g31830
Os.36859.1.S1_at--1066--9791Chr08:19602949..19602973 (25 bp)
TAACGCTTTATTCCGTGCCCTATAG
LOC_Os08g31830
Os.36859.1.S1_at--19--4551Chr08:19602933..19602957 (25 bp)
GCCCTATAGTTGTCTGCATTGTGCA
LOC_Os08g31830
Target Sequence 
GTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGATTCCCGGGCATGGCGACGGCGGCGAAGGCG
TTCTGGAACAGCCCCGTCGGCCCCAGGACCACCCACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGCTT
AGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGA
GGTTTGCGTGGATGGTACAACCGCGGAACTACTTGCTTCTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTTATATCAG
TTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCT
CAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis