Browse Element(s) Details


OsAffx.16833.2.S1_at

Description tigr:9636.m03176
TID=OsAffx.16833.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g317909/11hypothetical protein
LOC_Os04g412201/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31770OsAffx.17279.1.S1_at11/118+19561541..19565016NB-ARC domain containing protein, expressed
LOC_Os08g31780NANA8+19568832..19572397NB-ARC domain containing protein, expressed
LOC_Os08g31790OsAffx.16833.2.S1_at9/118+19578315..19580035hypothetical protein
LOC_Os08g31790OsAffx.16833.1.S1_x_at1/118+19578315..19580035hypothetical protein
LOC_Os08g31800Os.24903.1.A1_at10/118+19582695..19586834NB-ARC domain containing protein, expressed
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16833.2.S1_at--749--5871NONE
GAGCCCCTCGCGATCAAGGTCAATG
NONE
OsAffx.16833.2.S1_at--264--4531NONE
GCCCCTCGCGATCAAGGTCAATGAC
NONE
OsAffx.16833.2.S1_at--424--7831Chr08:19578538..19578562 (25 bp)
GGTCAATGACACGATGTGAACCTTT
LOC_Os08g31790
OsAffx.16833.2.S1_at--558--8951Chr08:19578532..19578556 (25 bp)
TGACACGATGTGAACCTTTGAGTGT
LOC_Os08g31790
OsAffx.16833.2.S1_at--705--3311Chr08:19578499..19578523 (25 bp)
CACTACCAGTGCCTAGAGAGAAGTC
LOC_Os08g31790
OsAffx.16833.2.S1_at--924--9971Chr08:19578496..19578520 (25 bp)
TACCAGTGCCTAGAGAGAAGTCTAA
LOC_Os08g31790
OsAffx.16833.2.S1_at--793--5991Chr08:19578484..19578508 (25 bp)
GAGAGAAGTCTAAGGCCAAGGCTAA
LOC_Os08g31790
OsAffx.16833.2.S1_at--883--7092Chr04:24239434..24239454 (21 bp)
GTCTAAGGCCAAGGCTAAGACAAAG
LOC_Os04g41220
OsAffx.16833.2.S1_at--698--2191Chr08:19578418..19578442 (25 bp)
ACACAAACGATAGCGCTGCTACTGC
LOC_Os08g31790
OsAffx.16833.2.S1_at--932--2191Chr08:19578375..19578399 (25 bp)
ACAAAAAGGCAACTCCATTCCTGTG
LOC_Os08g31790
OsAffx.16833.2.S1_at--487--931Chr08:19578369..19578393 (25 bp)
AGGCAACTCCATTCCTGTGTCTCCG
LOC_Os08g31790
Target Sequence 
GAGCCCCTCGCGATCAAGGTCAATGACACGATGTGAACCTTTGAGTGTGTTGATGCCACTACCAGTGCCTAGAGAGAAGT
CTAAGGCCAAGGCTAAGACAAAGACCAAAGCTAAAGCCAAGATAGCTCCTAGGAAGAACACAAACGATAGCGCTGCTACT
GCGCCTTTGGCACAAGTCAAACAAAAAGGCAACTCCATTCCTGTGTCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16833.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis