Browse Element(s) Details


Os.24903.1.A1_at

Description gb:AK072641.1
DB_XREF= gi:32982664
TID=Os.24903.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132L07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132L07, full insert sequence.
FL= gb:AK072641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3180010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31770OsAffx.17279.1.S1_at11/118+19561541..19565016NB-ARC domain containing protein, expressed
LOC_Os08g31780NANA8+19568832..19572397NB-ARC domain containing protein, expressed
LOC_Os08g31790OsAffx.16833.2.S1_at9/118+19578315..19580035hypothetical protein
LOC_Os08g31790OsAffx.16833.1.S1_x_at1/118+19578315..19580035hypothetical protein
LOC_Os08g31800Os.24903.1.A1_at10/118+19582695..19586834NB-ARC domain containing protein, expressed
LOC_Os08g31810Os.9309.1.S1_at11/118+19588424..19593153RNA recognition motif family protein, expressed
LOC_Os08g31820NANA8+19601879..19602343hypothetical protein
LOC_Os08g31830Os.36859.1.S1_at11/118+19602879..19606389expressed protein
LOC_Os08g31840Os.15674.1.S1_at8/118+19606824..19611657TBC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24903.1.A1_at--528--811Chr08:19583206..19583230 (25 bp)
ATGGTCCATCCTATGTTGATCTGGC
LOC_Os08g31800
Os.24903.1.A1_at--1064--1591Chr08:19583104..19583128 (25 bp)
AGCTCCAGCAGCTTGAGTTTGGTTT
LOC_Os08g31800
Os.24903.1.A1_at--1070--6071Chr08:19583090..19583114 (25 bp)
GAGTTTGGTTTCAACGCACATGATA
LOC_Os08g31800
Os.24903.1.A1_at--513--7851Chr08:19583064..19583088 (25 bp)
GGTATCTGCGTATGGAGCTGGACTC
LOC_Os08g31800
Os.24903.1.A1_at--884--5891Chr08:19583050..19583074 (25 bp)
GAGCTGGACTCGATTTTGGCATCCA
LOC_Os08g31800
Os.24903.1.A1_at--177--9691Chr08:19582935..19582959 (25 bp)
TAACTCGGTTTCTCTCCGAGGAAGC
LOC_Os08g31800
Os.24903.1.A1_at--944--9271Chr08:19582921..19582945 (25 bp)
TCCGAGGAAGCTACCACGTTGAAAT
LOC_Os08g31800
Os.24903.1.A1_at--790--5931Chr08:19582865..19582889 (25 bp)
GAGCAGAGCTGACTTGGGACATCAT
LOC_Os08g31800
Os.24903.1.A1_at--748--10291Chr08:19582817..19582841 (25 bp)
TTTCCAGCCAAAATCGAGATGCCAA
LOC_Os08g31800
Os.24903.1.A1_at--1144--2591Chr08:19582760..19582784 (25 bp)
AACCGTCTATTGTTACATTGTTCCT
LOC_Os08g31800
Os.24903.1.A1_at--144--8131Chr08:19582678..19582873 (25 bp)
GGACATCCAAATGATTTCAGGCTGA
NONE
Target Sequence 
ATGGTCCATCCTATGTTGATCTGGCTTTGATCNTGCGTCATCAGTCAACTATCAAAAATGGACTTGGTATGGGTGTGATG
TTTGAAGCAGGGGCTATGCCGAAGCTCCAGCAGCTTGAGTTTGGTTTCAACGCACATGATATGGTATCTGCGTATGGAGC
TGGACTCGATTTTGGCATCCAGCNCNTTGCCTCCCTCAGGCATGTNCNTNTCTTCATCGACTGTAGGGATGCAAGTGATT
GNGAGATGGAGGCTGCACTGGCTGCAACCNCTAACTCGGTTTCTCTCCGAGGAAGCTACCACGTTGAAATNCNTANAATT
TTAANGAATGTGGAAAATGATGAGCAGAGCTGACTTGGGACATCATACAACATGGAACTAAACANAAAGTTTCCAGCCAA
AATCGAGATGCCAATATGGTTTGGTAATATATTAATNTTCCTCTTAAACCGTCTATTGTTACATTGTTCCTTNNCTCTTT
CTNTTTCTNGTNTCTGNTTTCAGTTGAAGTAAANNACTAAAGTGNNNTNNNNNNNCAATGTTTTGGACATCCAAATGATT
TCAGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24903.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis