Browse Element(s) Details


OsAffx.16833.1.S1_x_at

Description tigr:9636.m00431
TID=OsAffx.16833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g050309/11expressed protein
LOC_Os08g317901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04980NANA8+2545924..2549774retrotransposon protein, putative, unclassified
LOC_Os08g04990NANA8+2550993..2554852retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g05000NANA8+2557442..2559371retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g05010NANA8+2560311..2561892retrotransposon protein, putative, LINE subclass
LOC_Os08g05020NANA8+2567776..2568576expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030Os.50803.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_x_at9/118+2570243..2575403expressed protein
LOC_Os08g05040OsAffx.29038.1.S1_at11/118+2578493..2579379hypothetical protein
LOC_Os08g05040Os.23271.2.A1_x_at1/118+2578493..2579379hypothetical protein
LOC_Os08g05050OsAffx.16834.1.S1_at11/118+2586317..2586592hypothetical protein
LOC_Os08g05060OsAffx.11392.2.S1_x_at6/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.3.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.25352.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.20408.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.5.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05070OsAffx.5709.1.S1_at10/118+2600123..2603166hypothetical protein
LOC_Os08g05070Os.46444.1.S1_x_at1/118+2600123..2603166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16833.1.S1_x_at--225--3371Chr08:2574113..2574137 (25 bp)
CACCAGCGGTTTCATTGTGAATCTG
LOC_Os08g05030
OsAffx.16833.1.S1_x_at--706--6571Chr08:2574019..2574043 (25 bp)
GATTCTATTGCGGAGAGGCTTGGTA
LOC_Os08g05030
OsAffx.16833.1.S1_x_at--998--6631NONE
GTTGTTGTTCTACTTTACCTCAGTT
NONE
OsAffx.16833.1.S1_x_at--945--1432Chr08:19581908..19581932 (25 bp)
AGAATTACATAACCCTGCCACTTTA
NONE
OsAffx.16833.1.S1_x_at--36--4392Chr08:19581892..19581916 (25 bp)
GCCACTTTACAACACATCGGCAAAA
NONE
OsAffx.16833.1.S1_x_at--22--2411Chr08:2573453..2573477 (25 bp)
AAACATCAATGGCTTGAGACACCAT
LOC_Os08g05030
OsAffx.16833.1.S1_x_at--945--5971Chr08:2573438..2573462 (25 bp)
GAGACACCATATGATTTCACCTATA
LOC_Os08g05030
OsAffx.16833.1.S1_x_at--862--6531Chr08:2573426..2573450 (25 bp)
GATTTCACCTATAGAAGTTCGCATA
LOC_Os08g05030
OsAffx.16833.1.S1_x_at--341--6711Chr08:2573410..2573434 (25 bp)
GTTCGCATATGGCAATCAAGCATTA
LOC_Os08g05030
OsAffx.16833.1.S1_x_at--36--6272Chr08:19579921..19579945 (25 bp)
GATGTGGTGCTCCAATCCAATCATT
LOC_Os08g31790
OsAffx.16833.1.S1_x_at--750--5871NONE
GAGCCCCTCGGTTGAAGTTCATAAT
NONE
Target Sequence 
CACCAGCGGTTTCATTGTGAATCTGGTGAAAGTTGATTCTATTGCGGAGAGGCTTGGTATTAGACGAGGGGATGTGATTG
TTTTTCAGGATAGTTGTTGTTCTACTTTACCTCAGTTAGAAGACTACCTTCTTTCTCTTGGCTGGGGATACCTGCAGGGG
AAAAGTTTGACAGTAGATCTCAAGAATTACATAACCCTGCCACTTTACAACACATCGGCAAAAAGGGAAAACATCAATGG
CTTGAGACACCATATGATTTCACCTATAGAAGTTCGCATATGGCAATCAAGCATTAGGGGGAACTTGCCAGTGCGGGCGC
GATGGCCGCTGTCGAGGTTGGAAATGGCGTGGGTAGACAGGGGCACAGGGCACGGCGTTGCAAATAGAGGTCAGGGGCGA
GACGGCCGAGAAGATGTGGTGCTCCAATCCAATCATTACGCCGGCCACCACGCCGTCATCAACTCCGCTCCGTCGCAGCC
CGGCGTGGACGCGCCGCCTCTGCCGAGCCCCTCGGTTGAAGTTCATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16833.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis