Browse Element(s) Details


OsAffx.5709.1.S1_at

Description tigr:9636.m00435
TID=OsAffx.5709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0507010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05030OsAffx.16833.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030Os.50803.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_x_at9/118+2570243..2575403expressed protein
LOC_Os08g05040OsAffx.29038.1.S1_at11/118+2578493..2579379hypothetical protein
LOC_Os08g05040Os.23271.2.A1_x_at1/118+2578493..2579379hypothetical protein
LOC_Os08g05050OsAffx.16834.1.S1_at11/118+2586317..2586592hypothetical protein
LOC_Os08g05060OsAffx.11392.2.S1_x_at6/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.3.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.25352.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.20408.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.5.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05070OsAffx.5709.1.S1_at10/118+2600123..2603166hypothetical protein
LOC_Os08g05070Os.46444.1.S1_x_at1/118+2600123..2603166hypothetical protein
LOC_Os08g05080OsAffx.5710.1.S1_at11/118+2604863..2606136hypothetical protein
LOC_Os08g05090OsAffx.5711.1.S1_x_at11/118+2617172..2617546hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5709.1.S1_at--416--3391Chr08:2600306..2600330 (25 bp)
CAGCGACAGGGCGATGGACACCGGA
LOC_Os08g05070
OsAffx.5709.1.S1_at--536--2171NONE
ACACCGGAGCAGGACGGGATTCAGG
NONE
OsAffx.5709.1.S1_at--242--131Chr08:2601716..2601740 (25 bp)
ATTCAGGGCTATCACTATCTGCCAC
LOC_Os08g05070
OsAffx.5709.1.S1_at--887--10151Chr08:2601731..2601755 (25 bp)
TATCTGCCACCTGCCTCTGATAAAT
LOC_Os08g05070
OsAffx.5709.1.S1_at--532--4271Chr08:2601740..2601764 (25 bp)
CCTGCCTCTGATAAATCCGTGGGTA
LOC_Os08g05070
OsAffx.5709.1.S1_at--471--9471Chr08:2601746..2601770 (25 bp)
TCTGATAAATCCGTGGGTAATCTTT
LOC_Os08g05070
OsAffx.5709.1.S1_at--523--8634Chr09:1732865..1732884 (20 bp)
TGGGTAATCTTTAACCTAGACAAAG
NONE
OsAffx.5709.1.S1_at--1070--951Chr08:2602677..2602701 (25 bp)
AGGACCGTCAACATCGGGCTCAGAG
LOC_Os08g05070
OsAffx.5709.1.S1_at--456--9711Chr08:2602684..2602708 (25 bp)
TCAACATCGGGCTCAGAGCAGAGGG
LOC_Os08g05070
OsAffx.5709.1.S1_at--609--3431Chr08:2602830..2602854 (25 bp)
CAGAGGCCGACGCACGGTGAAGGGA
LOC_Os08g05070
OsAffx.5709.1.S1_at--692--8211Chr08:2602879..2602903 (25 bp)
GGCAGCGCTCGGTGTCGGAAGGGAA
LOC_Os08g05070
Target Sequence 
CAGCGACAGGGCGATGGACACCGGAGCAGGACGGGATTCAGGGCTATCACTATCTGCCACCTGCCTCTGATAAATCCGTG
GGTAATCTTTAACCTAGACAAAGGACCGTCAACATCGGGCTCAGAGCAGAGGGAGGGAGCGGCGGCGGGGCTGCTGCCAT
GCGGAGGGGCAGCAGCGCCGGCTGCTACCGCGCGGAAGGGAGGCAGAGGCGGTGGCGACGGCGTCGGCGTCGGCGTGGGC
AACGGGGAGCGAGGCAGAGGCCGACGCACGGTGAAGGGAGGGTGGGGAGCCAGGCCTGGTGGTGGCAGCGCTCGGTGTCG
GAAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis