Browse Element(s) Details


OsAffx.17801.1.S1_at

Description tigr:9637.m01753
TID=OsAffx.17801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT004567 At1g78130
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2052011/11Major Facilitator Superfamily protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20480Os.19228.1.S1_at11/119+12344751..12348658transporter, putative, expressed
LOC_Os09g20490OsAffx.17800.1.S1_at11/119+12354828..12358222transporter, putative, expressed
LOC_Os09g20500OsAffx.17800.2.S1_at11/119+12359741..12362625hypothetical protein
LOC_Os09g20510OsAffx.29941.1.S1_at11/119+12363873..12366414Major Facilitator Superfamily protein
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative
LOC_Os09g20540OsAffx.6001.1.S1_x_at1/119+12375829..12377161expressed protein
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20560OsAffx.6345.1.S1_at11/119+12388175..12391354Pumilio-family RNA binding repeat containing protein
LOC_Os09g20570OsAffx.29943.2.S1_x_at11/119+12393523..12394527hypothetical protein
LOC_Os09g20570OsAffx.29943.1.S1_at6/119+12393523..12394527hypothetical protein
LOC_Os09g20580OsAffx.29946.2.S1_at9/119+12395128..12398351hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17801.1.S1_at--202--7891Chr09:12369671..12369695 (25 bp)
GGTTCAAGAACTCCGGCCGCATCGT
LOC_Os09g20520
OsAffx.17801.1.S1_at--1066--7571Chr09:12369808..12369832 (25 bp)
GGGCTCATGGCGTCGTGGAATCCCT
LOC_Os09g20520
OsAffx.17801.1.S1_at--143--7511Chr09:12369822..12369846 (25 bp)
GTGGAATCCCTCGTCGACGAACGGC
LOC_Os09g20520
OsAffx.17801.1.S1_at--512--5451Chr09:12369840..12369864 (25 bp)
GAACGGCCCGATACTGGCGGAGATC
LOC_Os09g20520
OsAffx.17801.1.S1_at--661--4231Chr09:12369847..12369871 (25 bp)
CCGATACTGGCGGAGATCGTGCCGC
LOC_Os09g20520
OsAffx.17801.1.S1_at--910--9332Chr09:12369956..12369980 (25 bp)
TCGCCGAGCGCCTGTACGGCTACGA
LOC_Os09g20520
OsAffx.17801.1.S1_at--512--4651Chr09:12370033..12370057 (25 bp)
GCGTCCCTCGCGAGTGCACTGTACA
LOC_Os09g20520
OsAffx.17801.1.S1_at--806--9331Chr09:12370040..12370064 (25 bp)
TCGCGAGTGCACTGTACACCGCCAT
LOC_Os09g20520
OsAffx.17801.1.S1_at--698--532Chr09:12370063..12370087 (25 bp)
ATCGCCGTCCCCATGGTGCTGTGCT
LOC_Os09g20520
OsAffx.17801.1.S1_at--368--8611Chr09:12370076..12370100 (25 bp)
TGGTGCTGTGCTGCCTCATCTACTC
LOC_Os09g20520
OsAffx.17801.1.S1_at--533--9111Chr09:12370084..12370108 (25 bp)
TGCTGCCTCATCTACTCGTTCCTGT
LOC_Os09g20520
Target Sequence 
GGTTCAAGAACTCCGGCCGCATCGTCCTCGCCCAGGTCAGCTCCGGCTCGGCGGTGCCCCTCGCCGCCGTCCTCCTCCTC
GCGCTCCACGGCGACCCACCCGCCGCCGCCAAGCACGGCGCCGCGCTGTTCGCCCTGGGGCTCATGGCGTCGTGGAATCC
CTCGTCGACGAACGGCCCGATACTGGCGGAGATCGTGCCGCCGCGGTCGAGGACGAGCGTGTACGCGCTGGACCGGACGT
GCGAGGCCGTGCTCGCGTCGTTCGCGCCGACGGTGGTCGGCGTCCTCGCCGAGCGCCTGTACGGCTACGACCTGGCTGCG
CGGGGGGGCGCCGCCGCCGTCGAGGCGGAGCGGCGCAACGCGGCGTCCCTCGCGAGTGCACTGTACACCGCCATCGCCGT
CCCCATGGTGCTGTGCTGCCTCATCTACTCGTTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis