Browse Element(s) Details


OsAffx.6345.1.S1_at

Description tigr:9637.m01757
TID=OsAffx.6345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=00806 domains.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2056011/11Pumilio-family RNA binding repeat containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20510OsAffx.29941.1.S1_at11/119+12363873..12366414Major Facilitator Superfamily protein
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative
LOC_Os09g20540OsAffx.6001.1.S1_x_at1/119+12375829..12377161expressed protein
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20560OsAffx.6345.1.S1_at11/119+12388175..12391354Pumilio-family RNA binding repeat containing protein
LOC_Os09g20570OsAffx.29943.2.S1_x_at11/119+12393523..12394527hypothetical protein
LOC_Os09g20570OsAffx.29943.1.S1_at6/119+12393523..12394527hypothetical protein
LOC_Os09g20580OsAffx.29946.2.S1_at9/119+12395128..12398351hypothetical protein
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein
LOC_Os09g20600NANA9+12415811..12416083hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6345.1.S1_at--933--2511Chr09:12389316..12389340 (25 bp)
AACTTAGGGTGATACAGGCATGCAT
LOC_Os09g20560
OsAffx.6345.1.S1_at--860--4971Chr09:12389333..12389357 (25 bp)
GCATGCATACAGTGTTTTCCAGCCG
LOC_Os09g20560
OsAffx.6345.1.S1_at--438--6791Chr09:12389346..12389370 (25 bp)
GTTTTCCAGCCGACATTGCTAAGGT
LOC_Os09g20560
OsAffx.6345.1.S1_at--210--4931Chr09:12390198..12390222 (25 bp)
GCTTGTCATCTAAACGGGTTGCTAT
LOC_Os09g20560
OsAffx.6345.1.S1_at--426--7451Chr09:12390295..12390319 (25 bp)
GTGTCTATCTTGCTAAACATCGCAG
LOC_Os09g20560
OsAffx.6345.1.S1_at--550--8511Chr09:12390912..12390936 (25 bp)
TGGACACCCATTCCACCTGGAAATA
LOC_Os09g20560
OsAffx.6345.1.S1_at--109--2191Chr09:12390955..12390979 (25 bp)
ACACATTACGTGGATCTCGCAAGAC
LOC_Os09g20560
OsAffx.6345.1.S1_at--169--6811Chr09:12391060..12391084 (25 bp)
GTTTTAGATCTTGACCACTTCAGAG
LOC_Os09g20560
OsAffx.6345.1.S1_at--480--3111Chr09:12391108..12391132 (25 bp)
AATTATGTAATCTCAACCGCCCTTC
LOC_Os09g20560
OsAffx.6345.1.S1_at--579--10731Chr09:12391133..12391251 (25 bp)
TTGCATGCACGGTTCCTGTTAGAGA
LOC_Os09g20560
OsAffx.6345.1.S1_at--1049--3171Chr09:12391261..12391285 (25 bp)
CAATACCATCATTTCCCTTCAAGAT
LOC_Os09g20560
Target Sequence 
AACTTAGGGTGATACAGGCATGCATACAGTGTTTTCCAGCCGACATTGCTAAGGTTTTAGTTGATGCTGTTGTTGAGAAT
TGTATCGAGATAGCTTGTCATCTAAACGGGTTGCTATTTCTGCAAAACTGTTTGGGGCATATAACATTAGAAGAAAAGTA
CAAGATTTTTACTCAAGTTTGTATTAACAGTGTCTATCTTGCTAAACATCGCAGCGGAAATTATATTGTGCAGGATGTTT
TGGAATTTGGACACCCATTCCACCTGGAAATAATAACATCATGCTTTAAAACACATTACGTGGATCTCGCAAGACAAAAA
TATAGTAGTCGTGTTGTGGAGAAGTGCCTTAAAGTATTTGGTGACCTGGAGCAATATTTGATTGTATGTGAGTTGGTTTT
AGATCTTGACCACTTCAGAGATTTGGTGACAGATGAGGTTGCTAATTATGTAATCTCAACCGCCCTTCTTGCATGCACGG
TTCCTGTTAGAGATATTTTGGCCAATACCATCATTTCCCTTCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis