Browse Element(s) Details


OsAffx.17803.1.S1_x_at

Description tigr:9637.m01756
TID=OsAffx.17803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161495 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2055010/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20490OsAffx.17800.1.S1_at11/119+12354828..12358222transporter, putative, expressed
LOC_Os09g20500OsAffx.17800.2.S1_at11/119+12359741..12362625hypothetical protein
LOC_Os09g20510OsAffx.29941.1.S1_at11/119+12363873..12366414Major Facilitator Superfamily protein
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative
LOC_Os09g20540OsAffx.6001.1.S1_x_at1/119+12375829..12377161expressed protein
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20560OsAffx.6345.1.S1_at11/119+12388175..12391354Pumilio-family RNA binding repeat containing protein
LOC_Os09g20570OsAffx.29943.2.S1_x_at11/119+12393523..12394527hypothetical protein
LOC_Os09g20570OsAffx.29943.1.S1_at6/119+12393523..12394527hypothetical protein
LOC_Os09g20580OsAffx.29946.2.S1_at9/119+12395128..12398351hypothetical protein
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17803.1.S1_x_at--1069--9731Chr09:12384921..12384945 (25 bp)
TCAATCCATTGTCCTCACCCTAGGG
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--443--3652Chr09:12384951..12384975 (25 bp)
CTTCATCACCATTGCCATTGACTTG
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--146--4331NONE
CCATTGACTTGGGTGCCAGTGGTAT
NONE
OsAffx.17803.1.S1_x_at--450--5391Chr09:12386141..12386165 (25 bp)
GAAGCGGGAATCTGCCAAAGCGAAT
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--433--1091Chr09:12386204..12386228 (25 bp)
AGTGGAGTCTCGGTGCTTCAAAGAT
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--979--5331Chr09:12386244..12386268 (25 bp)
GAAGATGAACTAGCCCGTCTACAAA
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--497--7751Chr09:12386277..12386301 (25 bp)
GGTGTTAATCATCCAACTGTTCCCT
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--160--8611Chr09:12386315..12386339 (25 bp)
TGGTGTGGCCGATCGAAACTCCACG
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--417--5371Chr09:12386411..12386435 (25 bp)
GAAGACAAGCCGTCGCAGGGACTGC
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--816--991Chr09:12386452..12386476 (25 bp)
AGGAGGCGTGCGTGATCCTGCTTCA
LOC_Os09g20550
OsAffx.17803.1.S1_x_at--951--1031Chr09:12386488..12386512 (25 bp)
AGGTGCTCTGCGTCGGTTGCAACAA
LOC_Os09g20550
Target Sequence 
TCAATCCATTGTCCTCACCCTAGGGCGCTGCTTCATCACCATTGCCATTGACTTGGGTGCCAGTGGTATGAAAATAAGAG
AAGACACAAAAGCCAAAGAAGAAAACCTGGCGCTTGCAGAACAGGAGCACGCGAAGCGGGAATCTGCCAAAGCGAATGCT
GAACGCCGACTGGAAGAAATACGCCAGAAGACAGAAGTGGAGTCTCGGTGCTTCAAAGATGATATCAAGAGGCTTGAAGA
TGAACTAGCCCGTCTACAAAAGTCGATGGGTGTTAATCATCCAACTGTTCCCTCAACCCACCCTCCTGGTGTGGCCGATC
GAAACTCCACGCGGGCGCCAAAGCAGCCCACCAACCAAAGGCCATCGCCCGCGTCGAACAAGCAGTCGCAAGCGCCTACC
CAGAAGACAAGCCGTCGCAGGGACTGCGTGATCTGCAAGAGGGAGGAGGCGTGCGTGATCCTGCTTCAGTGCGCCCACCA
GGTGCTCTGCGTCGGTTGCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17803.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis