Browse Element(s) Details


Os.48200.1.S1_x_at

Description gb:AK064341.1
DB_XREF= gi:32974359
TID=Os.48200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-H04, full insert sequence.
FL= gb:AK064341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2059010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20560OsAffx.6345.1.S1_at11/119+12388175..12391354Pumilio-family RNA binding repeat containing protein
LOC_Os09g20570OsAffx.29943.2.S1_x_at11/119+12393523..12394527hypothetical protein
LOC_Os09g20570OsAffx.29943.1.S1_at6/119+12393523..12394527hypothetical protein
LOC_Os09g20580OsAffx.29946.2.S1_at9/119+12395128..12398351hypothetical protein
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein
LOC_Os09g20600NANA9+12415811..12416083hypothetical protein
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48200.1.S1_x_at--236--5111Chr09:12410924..12410948 (25 bp)
GCACGGGCTATTACTATGATTCTAC
LOC_Os09g20590
Os.48200.1.S1_x_at--910--2091Chr09:12410947..12410971 (25 bp)
ACATCTGGATGTTATTGCTCTGCAT
LOC_Os09g20590
Os.48200.1.S1_x_at--1078--951NONE
AGGAGCCTGGTACTCGTATGACGAA
NONE
Os.48200.1.S1_x_at--334--7171Chr09:12411925..12411949 (25 bp)
GTCTGAACAAGCCAGCACGGTCAAT
LOC_Os09g20590
Os.48200.1.S1_x_at--539--6091Chr09:12411983..12412007 (25 bp)
GAGTACTTGTAATTGGCTCTCTCAA
LOC_Os09g20590
Os.48200.1.S1_x_at--1031--7631Chr09:12412030..12412054 (25 bp)
GGGATGTAGCTTCAGTTTTTCGGTA
LOC_Os09g20590
Os.48200.1.S1_x_at--957--7571Chr09:12412058..12412082 (25 bp)
GGGCATTCGAATCTCACTTTTGTTT
LOC_Os09g20590
Os.48200.1.S1_x_at--243--2311Chr09:12412103..12412127 (25 bp)
AAAGGCTGTCTTACTACCATAGGAT
LOC_Os09g20590
Os.48200.1.S1_x_at--962--1451Chr09:12412146..12412170 (25 bp)
AGAATGATCCGCTGAGTGCAACCCT
LOC_Os09g20590
Os.48200.1.S1_x_at--902--10411Chr09:12412170..12412194 (25 bp)
TTACGCCCACTTCTTTATTTTGCAT
LOC_Os09g20590
Os.48200.1.S1_x_at--87--8751Chr09:12412232..12412256 (25 bp)
TGTAATATTCCCTGCCATGTTCAGC
LOC_Os09g20590
Target Sequence 
GCACGGGCTATTACTATGATTCTACATCTGGATGTTATTGCTCTGCATCTACAGGAGCCTGGTACTCGTATGACGAACAA
ACTGGCGAATACAAAGAGATACAGTCTGAACAAGCCAGCACGGTCAATGAAACACCGGGAGATGGCATCAAAGAGTAGCC
CGAGTACTTGTAATTGGCTCTCTCAAGTTAGCTTGTTTATTACACAGTGGGATGTAGCTTCAGTTTTTCGGTAGAGGGGC
ATTCGAATCTCACTTTTGTTTGTACAAGTACGGGGAGAATGAAAGGCTGTCTTACTACCATAGGATTTTATTTAGATATA
GAGCAGAATGATCCGCTGAGTGCAACCCTTACGCCCACTTCTTTATTTTGCATTGCCCCATGGTCCATTTCCCTGTACAA
ATCTGTGACATGTAATATTCCCTGCCATGTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48200.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis