Browse Element(s) Details


Os.52436.1.S1_at

Description gb:AK067111.1
DB_XREF= gi:32977129
TID=Os.52436.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095J15, full insert sequence.
FL= gb:AK067111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2063011/11ASC1-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein
LOC_Os09g20600NANA9+12415811..12416083hypothetical protein
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed
LOC_Os09g20660Os.23191.1.S1_at11/119+12442364..12444865Brain protein 44, putative, expressed
LOC_Os09g20670OsAffx.1586.2.A1_s_at11/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_x_at9/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_at8/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.2.A1_at6/119+12446164..12447018hypothetical protein
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52436.1.S1_at--23--8851Chr09:12429137..12429161 (25 bp)
TGATCTGGTACCTTTTTCAGCTATG
LOC_Os09g20630
Os.52436.1.S1_at--951--5331Chr09:12429161..12429185 (25 bp)
GAAGTACTGCTGACCTTGGACAAAG
LOC_Os09g20630
Os.52436.1.S1_at--426--10331Chr09:12429198..12429222 (25 bp)
TTTACGGCCCCATATACTACTATGT
LOC_Os09g20630
Os.52436.1.S1_at--703--2031Chr09:12429216..12429240 (25 bp)
ACTATGTTTTCAACAGCCTTCTGTT
LOC_Os09g20630
Os.52436.1.S1_at--270--6731Chr09:12429238..12429262 (25 bp)
GTTCTCACTTCTAGTTCTTCACATA
LOC_Os09g20630
Os.52436.1.S1_at--343--3131Chr09:12429301..12429325 (25 bp)
AATTCAATCTAGAGGCCGTATCGGC
LOC_Os09g20630
Os.52436.1.S1_at--937--2751Chr09:12429458..12429482 (25 bp)
AAGACTAATCTGTGGGCTGAATGCT
LOC_Os09g20630
Os.52436.1.S1_at--479--8991Chr09:12429531..12429555 (25 bp)
TGAATACCTGATTCCCAGACCAGAT
LOC_Os09g20630
Os.52436.1.S1_at--1101--10511Chr09:12429587..12429611 (25 bp)
TTCACGAGTTGCTAGGAGGCTGCTT
LOC_Os09g20630
Os.52436.1.S1_at--1050--4911Chr09:12429608..12429632 (25 bp)
GCTTGCGCTGCCATATACTTTATGA
LOC_Os09g20630
Os.52436.1.S1_at--738--7051Chr09:12429785..12429809 (25 bp)
GTAACTTGGTGTATCTTCCATTCTA
LOC_Os09g20630
Target Sequence 
TGATCTGGTACCTTTTTCAGCTATGAAGTACTGCTGACCTTGGACAAAGAGAAGCATAAATTTTACGGCCCCATATACTA
CTATGTTTTCAACAGCCTTCTGTTCTCACTTCTAGTTCTTCACATATATTGGTGGGTACTAATATACCGGATGCTAGTCA
AGCAAATTCAATCTAGAGGCCGTATCGGCGATGATGTTCGATCTGATTCTGAAGGTGAAGAAGATCATGAAGACTAATCT
GTGGGCTGAATGCTTAACTGAAGAACTATATATAGTGATCCCTACATGAAGATACATCATATTGAATACCTGATTCCCAG
ACCAGATCAATTTTCAGTATCAAACATGGCAACCATGATTCACGAGTTGCTAGGAGGCTGCTTGCGCTGCCATATACTTT
ATGAGAAAAAGTTGATCAATGTTTTCCCCCCTTATATCCTCATTTATAAGAGAAATATGCAGGATAAGTTCGTTAATTCA
TTGGTTCATTCATGTAATTGTGCAGACGATTAATTAATTTACGGTGCAATCATGTAATGTTCTGTGGAACTCGATTGTAA
CTTGGTGTATCTTCCATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis