Browse Element(s) Details


Os.49852.1.S1_at

Description gb:AK112000.1
DB_XREF= gi:37988663
TID=Os.49852.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B07, full insert sequence.
FL= gb:AK099105.1 gb:AK112000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2064011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein
LOC_Os09g20600NANA9+12415811..12416083hypothetical protein
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed
LOC_Os09g20660Os.23191.1.S1_at11/119+12442364..12444865Brain protein 44, putative, expressed
LOC_Os09g20670OsAffx.1586.2.A1_s_at11/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_x_at9/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_at8/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.2.A1_at6/119+12446164..12447018hypothetical protein
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49852.1.S1_at--416--10471Chr09:12431071..12431095 (25 bp)
TTACCGTGCACCTGAACTGTGGGAC
LOC_Os09g20640
Os.49852.1.S1_at--193--9171Chr09:12431046..12431070 (25 bp)
TGCCCAAGTCATGCCGATATCGATG
LOC_Os09g20640
Os.49852.1.S1_at--562--1411Chr09:12431014..12431038 (25 bp)
AGACATCTGGTCTCTAGGATGCACC
LOC_Os09g20640
Os.49852.1.S1_at--275--7991Chr09:12430998..12431022 (25 bp)
GGATGCACCCTTTATGCTATCATGT
LOC_Os09g20640
Os.49852.1.S1_at--674--6831Chr09:12430456..12430480 (25 bp)
GTTTCACCATTTGAGTATGCTCTCG
LOC_Os09g20640
Os.49852.1.S1_at--115--10471Chr09:12430408..12430432 (25 bp)
TTAGCCATTGTCAACTGCACGCTGA
LOC_Os09g20640
Os.49852.1.S1_at--192--10411Chr09:12430335..12430359 (25 bp)
TTATTACCTGGATGCTTCAGCCACA
LOC_Os09g20640
Os.49852.1.S1_at--262--4571Chr09:12430301..12430325 (25 bp)
GCGCCCTCACATCGATGACATAATT
LOC_Os09g20640
Os.49852.1.S1_at--694--2371Chr09:12430239..12430263 (25 bp)
AAACCTGCTGAACATACTACTGACT
LOC_Os09g20640
Os.49852.1.S1_at--60--7151Chr09:12430161..12430185 (25 bp)
GTCTGAGGTCTTTCCTTACTGAGAA
LOC_Os09g20640
Os.49852.1.S1_at--694--8951Chr09:12430085..12430109 (25 bp)
TGACATGCCTCCTAACTGTTGTTAA
LOC_Os09g20640
Target Sequence 
TTACCGTGCACCTGAACTGTGGGACTGCCCAAGTCATGCCGATATCGATGAGAGGACAGACATCTGGTCTCTAGGATGCA
CCCTTTATGCTATCATGTACAATGTTTCACCATTTGAGTATGCTCTCGGTGAATCTGGAGGAAGCTTGCAATTAGCCATT
GTCAACTGCACGCTGAAGTGGCCGGCAGGACCCAGCCCTCCTTACCCTGATGCACTTCATCAGTTTATTACCTGGATGCT
TCAGCCACAACCTGCAATGCGCCCTCACATCGATGACATAATTCTACATGTCGAAAAGCTTATGGAAAAATATTCGTCTT
AAACCTGCTGAACATACTACTGACTTTGTTTACACAGTTACACAATTGAATATATTGCAAATTGTGAACATTGTTCATGT
CTGAGGTCTTTCCTTACTGAGAATTGAGATTGAGTAGGCACAATTTATTCTTTGTGGATCTTTCAGATTGTAATTGACAT
GCCTCCTAACTGTTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis