Browse Element(s) Details


Os.23191.1.S1_at

Description gb:AK058870.1
DB_XREF= gi:32968888
TID=Os.23191.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-006-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-006-E05, full insert sequence.
FL= gb:AK058870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2066011/11Brain protein 44, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed
LOC_Os09g20660Os.23191.1.S1_at11/119+12442364..12444865Brain protein 44, putative, expressed
LOC_Os09g20670OsAffx.1586.2.A1_s_at11/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_x_at9/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_at8/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.2.A1_at6/119+12446164..12447018hypothetical protein
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed
LOC_Os09g20700NANA9+12465522..12466997Strictosidine synthase family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23191.1.S1_at--523--7751Chr09:12444417..12444441 (25 bp)
GGTGAAGGCGTTCCTGAACAGCCCC
LOC_Os09g20660
Os.23191.1.S1_at--442--6511Chr09:12442917..12442941 (25 bp)
GATTTGCCTGGATGGTACAACCACG
LOC_Os09g20660
Os.23191.1.S1_at--74--8151Chr09:12442893..12442917 (25 bp)
GGAACTATTTACTTTTAGCATGCCA
LOC_Os09g20660
Os.23191.1.S1_at--582--4431Chr09:12442872..12442896 (25 bp)
GCCATGCTTCCAATGAATCGGTTCA
LOC_Os09g20660
Os.23191.1.S1_at--1161--1571Chr09:12442848..12442872 (25 bp)
AGCTCTATCAGATGTCTCGGTGGGC
LOC_Os09g20660
Os.23191.1.S1_at--41--2371Chr09:12442621..12442645 (25 bp)
AAAGCGCAGCATTTAGCTTCTCAAT
LOC_Os09g20660
Os.23191.1.S1_at--127--2431Chr09:12442593..12442617 (25 bp)
AAAACTTGTCTCATGTCCATCAATG
LOC_Os09g20660
Os.23191.1.S1_at--131--7271Chr09:12442579..12442603 (25 bp)
GTCCATCAATGCTGAGTCTGTAACA
LOC_Os09g20660
Os.23191.1.S1_at--1091--1271Chr09:12442542..12442566 (25 bp)
AGATCATATCTTCCTTGTGTGCCAT
LOC_Os09g20660
Os.23191.1.S1_at--1113--10831Chr09:12442528..12442552 (25 bp)
TTGTGTGCCATAAGTGCTTGCCCCT
LOC_Os09g20660
Os.23191.1.S1_at--468--7331Chr09:12442515..12442539 (25 bp)
GTGCTTGCCCCTAATGTTATTTGAT
LOC_Os09g20660
Target Sequence 
GGTGAAGGCGTTCCTGAACAGCCCCGTCGGCCCCAAGACCACCCATTTCTGGGGGCCCGTTGCTAACTGGGGCTTCGTCC
TCGCGGGTTTGGTTGACATGAACAAACCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGA
CTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGTTCA
GCTCTATCAGATGTCTCGGTGGGCTAGGGNACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGTAAAAAAAAG
ACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAAT
CTCAGATCATATCTTCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis