Browse Element(s) Details


Os.56245.1.S1_at

Description gb:AK109686.1
DB_XREF= gi:32994895
TID=Os.56245.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D10, full insert sequence.
FL= gb:AK109686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2068411/11Strictosidine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed
LOC_Os09g20660Os.23191.1.S1_at11/119+12442364..12444865Brain protein 44, putative, expressed
LOC_Os09g20670OsAffx.1586.2.A1_s_at11/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_x_at9/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_at8/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.2.A1_at6/119+12446164..12447018hypothetical protein
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed
LOC_Os09g20700NANA9+12465522..12466997Strictosidine synthase family protein
LOC_Os09g20710OsAffx.29946.1.S1_at10/119+12474469..12476640RNA recognition motif family protein
LOC_Os09g20720NANA9+12483351..12483830Strictosidine synthase 1 precursor, putative
LOC_Os09g20730OsAffx.27726.2.S1_at11/119+12484713..12486169hypothetical protein
LOC_Os09g20730Os.55138.1.S1_x_at1/119+12484713..12486169hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56245.1.S1_at--226--3011Chr09:12459537..12459561 (25 bp)
AATGACGACGTAGCGCCGACCGTGG
LOC_Os09g20684
Os.56245.1.S1_at--206--10731Chr09:12459775..12459799 (25 bp)
TTGCACGGTGCAGCTACCCTGATTA
LOC_Os09g20684
Os.56245.1.S1_at--979--5051Chr09:12459784..12459808 (25 bp)
GCAGCTACCCTGATTAAATTTCGTT
LOC_Os09g20684
Os.56245.1.S1_at--913--7011Chr09:12459816..12459840 (25 bp)
GTACATACGATGTGTGGTCTAATCT
LOC_Os09g20684
Os.56245.1.S1_at--634--7471Chr09:12459827..12459851 (25 bp)
GTGTGGTCTAATCTTATCTTAACTA
LOC_Os09g20684
Os.56245.1.S1_at--438--3571Chr09:12459863..12459887 (25 bp)
CATATTTTTTCCTTTCGTCACAACA
LOC_Os09g20684
Os.56245.1.S1_at--785--7071Chr09:12459879..12459903 (25 bp)
GTCACAACAAGAATTTCGTCCGTAA
LOC_Os09g20684
Os.56245.1.S1_at--479--5211Chr09:12459889..12459913 (25 bp)
GAATTTCGTCCGTAAAGTCTTCAGT
LOC_Os09g20684
Os.56245.1.S1_at--575--1151Chr09:12459904..12459928 (25 bp)
AGTCTTCAGTTTGTGCCCTACGTCC
LOC_Os09g20684
Os.56245.1.S1_at--294--1831Chr09:12459933..12459957 (25 bp)
ACGCGCATCGCGTAATACTTTTGCA
LOC_Os09g20684
Os.56245.1.S1_at--946--8211Chr09:12459967..12459991 (25 bp)
GGCAATATAATCACAACAATTTCCT
LOC_Os09g20684
Target Sequence 
AATGACGACGTAGCGCCGACCGTGGCCGTGCGGGTGACGGCGGCGGGGAAGAAGAAGGGTGGAGGCGCGGCGGTGGTGGC
AGAGGCGCTCGCCGGGTTCAGCTTCGTGACGGTGAGCGAGGTGGCGGAGCAGAATGGCACGCTCTGGATCGGCTCCGTCG
ACACGCCGTACGCCGGCGCCGCGGTGAGGGGTCGCCGGTGACCATGTTCCGTCGGGCGGTTGGTGGTGCCGGTGTGCGTT
GCACGGTGCAGCTACCCTGATTAAATTTCGTTACATTTAGTACATACGATGTGTGGTCTAATCTTATCTTAACTAATTAA
AATATTCATATTTTTTCCTTTCGTCACAACAAGAATTTCGTCCGTAAAGTCTTCAGTTTGTGCCCTACGTCCCCGCACGC
GCATCGCGTAATACTTTTGCAGATTTTTTTGGCAATATAATCACAACAATTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis