Browse Element(s) Details


OsAffx.29946.2.S1_at

Description tigr:9637.m01759
TID=OsAffx.29946.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g205809/11hypothetical protein
LOC_Os03g594701/115-azacytidine resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20520OsAffx.17801.1.S1_at11/119+12368673..12370254Major Facilitator Superfamily protein
LOC_Os09g20530NANA9+12371139..12371660Pyruvate decarboxylase isozyme 3, putative
LOC_Os09g20540OsAffx.6001.1.S1_x_at1/119+12375829..12377161expressed protein
LOC_Os09g20550Os.51816.1.S1_at11/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_x_at10/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20550OsAffx.17803.1.S1_at7/119+12382167..12386954zinc finger protein, putative, expressed
LOC_Os09g20560OsAffx.6345.1.S1_at11/119+12388175..12391354Pumilio-family RNA binding repeat containing protein
LOC_Os09g20570OsAffx.29943.2.S1_x_at11/119+12393523..12394527hypothetical protein
LOC_Os09g20570OsAffx.29943.1.S1_at6/119+12393523..12394527hypothetical protein
LOC_Os09g20580OsAffx.29946.2.S1_at9/119+12395128..12398351hypothetical protein
LOC_Os09g20590Os.48200.2.S1_at11/119+12406494..12412334expressed protein
LOC_Os09g20590Os.48200.1.S1_x_at10/119+12406494..12412334expressed protein
LOC_Os09g20600NANA9+12415811..12416083hypothetical protein
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29946.2.S1_at--329--2391Chr09:12396618..12396639 (22 bp)
AAACTAGAACGTAAGGACTGCATAT
LOC_Os09g20580
OsAffx.29946.2.S1_at--419--7074Chr09:19354875..19354899 (25 bp)
GTAAGGACTGCATATGCTTTTGCTT
NONE
OsAffx.29946.2.S1_at--1069--4953Chr09:19354884..19355113 (25 bp)
GCATATGCTTTTGCTTTTTATCTTT
NONE
OsAffx.29946.2.S1_at--968--4871Chr09:12396592..12396611 (20 bp)
GCTTTTTATCTTTTACAATGCCGGT
LOC_Os09g20580
OsAffx.29946.2.S1_at--889--10411NONE
TTATCTTTTACAATGCCGGTCTTCC
NONE
OsAffx.29946.2.S1_at--535--10491NONE
TTACAATGCCGGTCTTCCTCGTCAA
NONE
OsAffx.29946.2.S1_at--329--4011Chr09:12395456..12395480 (25 bp)
CGTCGGCGTCACTGCTCCCGGTGGA
LOC_Os09g20580
OsAffx.29946.2.S1_at--1039--4791Chr09:12395344..12395368 (25 bp)
GCTCGCGGGTCTGCGCCACAGGAGG
LOC_Os09g20580
OsAffx.29946.2.S1_at--686--4371Chr09:12395329..12395353 (25 bp)
CCACAGGAGGTCAGCGAAGAGCGGT
LOC_Os09g20580
OsAffx.29946.2.S1_at--665--3251Chr09:12395216..12395240 (25 bp)
CAACCTCGGCGGGCAAGACGAGCGT
LOC_Os09g20580
OsAffx.29946.2.S1_at--332--2771Chr09:12395202..12395226 (25 bp)
AAGACGAGCGTGTGGACGCGGATCC
LOC_Os09g20580
Target Sequence 
AAACTAGAACGTAAGGACTGCATATGCTTTTGCTTTTTATCTTTTACAATGCCGGTCTTCCTCGTCAACGGCGACGGCGG
GGACGCCGCACGCGCGCTCGCGTGGCTCGACGCGAAGCCCGCGCGGTCGGTGGTGTACATCTGCTTCGGCAGCCTCACCC
GGTTCCCGCACGAGCAGGTCGCCGAGCTCGGCATGGGGCTCGCGGACTCCGGCGTGAACTTCGTGTGGGTCGTCGGGGAC
AAGAACGCGTCGGCGTCACTGCTCCCGGTGGAGCGCCAGCGCGTGACGCTGCTGGCCAGCGAGTCCGCGCTCCGGCTGAT
GCAGCAGCCCATCTCCCCGCCAAACTCGCTCGCTCGCTCGCTCGCGGGTCTGCGCCACAGGAGGTCAGCGAAGAGCGGTG
CGAGGAGGTCGACGACAACGGCGAAGGGCCCCACGAGCTCGCGGCTGGGTAGGTCGTCGGCGCTCTCGTGCCCGCTCGTG
GGCCCCGCAACCTCGGCGGGCAAGACGAGCGTGTGGACGCGGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29946.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis