Browse Element(s) Details


OsAffx.29973.1.S1_at

Description tigr:9637.m01937
TID=OsAffx.29973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g311101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31080OsAffx.20300.1.S1_at10/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31080OsAffx.24861.1.S1_at8/1110+15931565..15940944retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31090OsAffx.30620.1.S1_at10/1110+15942570..15943039hypothetical protein
LOC_Os10g31100OsAffx.18470.1.S1_at11/1110+15947642..15948010hypothetical protein
LOC_Os10g31110OsAffx.30621.1.S1_at11/1110+15961122..15961594hypothetical protein
LOC_Os10g31110OsAffx.29973.1.S1_at1/1110+15961122..15961594hypothetical protein
LOC_Os10g31120OsAffx.8070.1.S1_x_at8/1110+15965493..15967757transposon protein, putative, Pong sub-class
LOC_Os10g31130OsAffx.21778.2.S1_x_at3/1110+15968207..15969133transposon protein, putative, Pong sub-class
LOC_Os10g31139NANA10+15970007..15970429NA
LOC_Os10g31150Os.46578.1.S1_at9/1110+15983551..15984006hypothetical protein
LOC_Os10g31150Os.46578.1.S1_x_at8/1110+15983551..15984006hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29973.1.S1_at--1147--9191Chr09:13472491..13472515 (25 bp)
TCCACCACCCTCATCCACGAAAGGG
NONE
OsAffx.29973.1.S1_at--1079--7751Chr09:13472467..13472491 (25 bp)
GGTGACCACGACATTGGGTAGCGAC
NONE
OsAffx.29973.1.S1_at--88--7391Chr09:13472466..13472490 (25 bp)
GTGACCACGACATTGGGTAGCGACA
NONE
OsAffx.29973.1.S1_at--614--5851Chr09:13472464..13472488 (25 bp)
GACCACGACATTGGGTAGCGACAGT
NONE
OsAffx.29973.1.S1_at--772--1851Chr09:13472460..13472484 (25 bp)
ACGACATTGGGTAGCGACAGTGGAT
NONE
OsAffx.29973.1.S1_at--777--4091Chr09:13472459..13472483 (25 bp)
CGACATTGGGTAGCGACAGTGGATC
NONE
OsAffx.29973.1.S1_at--1046--3591Chr09:13472456..13472480 (25 bp)
CATTGGGTAGCGACAGTGGATCTGA
NONE
OsAffx.29973.1.S1_at--630--1651Chr09:13472448..13472472 (25 bp)
AGCGACAGTGGATCTGACGGCGCCA
NONE
OsAffx.29973.1.S1_at--1071--4091Chr09:13472446..13472470 (25 bp)
CGACAGTGGATCTGACGGCGCCACC
NONE
OsAffx.29973.1.S1_at--1114--3451Chr09:13472443..13472467 (25 bp)
CAGTGGATCTGACGGCGCCACCCTT
NONE
OsAffx.29973.1.S1_at--976--793Chr10:15961301..15961511 (25 bp)
ATGGGCGGATCAGCCACCCCTGGCC
LOC_Os10g31110
Target Sequence 
TCCACCACCCTCATCCACGAAAGGGGTGACCACGACATTGGGTAGCGACAGTGGATCTGACGGCGCCACCCTTGGGATGG
GCGGATCAGCCACCCCTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis