Browse Element(s) Details


OsAffx.29998.1.S1_x_at

Description tigr:9637.m02085
TID=OsAffx.29998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 29119-30743
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2434011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24310OsAffx.30543.2.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.3.S1_at9/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24310OsAffx.30543.2.S1_x_at3/119+14444601..14453034heavy metal-associated domain containing protein, expressed
LOC_Os09g24320Os.27516.1.A1_at11/119+14453727..144564542-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os09g24330NANA9+14462612..14463476protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_x_at11/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24340OsAffx.29998.1.S1_at10/119+14466990..14468363protein kinase family protein, putative, expressed
LOC_Os09g24350Os.55213.1.S1_at10/119+14472051..14473027expressed protein
LOC_Os09g24359NANA9+14477208..14477505NA
LOC_Os09g24370OsAffx.17872.1.S1_s_at11/119+14478027..14478829expressed protein
LOC_Os09g24380NANA9+14491085..14493131retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29998.1.S1_x_at--544--371Chr09:14467717..14467736 (20 bp)
ATCACGCGTGGAGGCTGTACAAGAA
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--64--6191Chr09:14467740..14467764 (25 bp)
GAGGAGCATCGAGCTGCTCGACCCG
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--691--3831Chr09:14467801..14467825 (25 bp)
CTGCTGGTGCGGATCGGGCTGCTGT
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--341--1811Chr09:14467838..14467862 (25 bp)
ACCCGCGGATGAGGCCGGACATGAA
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--401--1631Chr09:14467862..14467886 (25 bp)
AGCGGGTGGTGATCATCCTGTCCAA
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--296--7411Chr09:14467870..14467894 (25 bp)
GTGATCATCCTGTCCAAGAAGCAGA
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--184--1531Chr09:14467889..14467913 (25 bp)
AGCAGAGCACGCTGGAGGAGCCGAC
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--852--6971Chr09:14467938..14467962 (25 bp)
GTACCGGCGGAGGTCGTACGGCACG
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--509--7191Chr09:14467993..14468017 (25 bp)
GTCGGGTCCACGTCCGGGACCAGCT
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--1121--5931Chr09:14468091..14468115 (25 bp)
GAGCACCCACACCATGCGGAGCCAG
LOC_Os09g24340
OsAffx.29998.1.S1_x_at--806--8311Chr09:14468117..14468141 (25 bp)
GGCTCCCCTTGCACCGGGAAGAGAG
LOC_Os09g24340
Target Sequence 
ATCACGCGTGGAGGCTGTACAAGAAGGGGAGGAGCATCGAGCTGCTCGACCCGGCGGTGAAGTCGGCGGCGGCGACGGAG
CAGGTGGAGCTGCTGGTGCGGATCGGGCTGCTGTGCGTGCAGGCCGACCCGCGGATGAGGCCGGACATGAAGCGGGTGGT
GATCATCCTGTCCAAGAAGCAGAGCACGCTGGAGGAGCCGACGCGGCCGGGCGTCCCCGGGTCGCGGTACCGGCGGAGGT
CGTACGGCACGCGCGGCGGCGGCGGCGGCTCCCACTTCTCCGTCGGGTCCACGTCCGGGACCAGCTCGCCGTCGACGTCC
ACCACCGCGTCGCACGCCACCACGTCGGCCGCGTCCAACGCCATGACGACGACGACGTCGAGCACCCACACCATGCGGAG
CCAGGGGCTCCCCTTGCACCGGGAAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29998.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis