Browse Element(s) Details


OsAffx.30005.1.S1_at

Description tigr:9637.m02123
TID=OsAffx.30005.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2473010/11hypothetical protein
LOC_Os05g163701/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24710Os.38084.2.S1_x_at11/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710Os.38084.1.S1_at10/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24720OsAffx.6388.1.A1_x_at9/119+14728630..14730118hypothetical protein
LOC_Os09g24720Os.5353.1.S1_at4/119+14728630..14730118hypothetical protein
LOC_Os09g24730OsAffx.30005.1.S1_at10/119+14730887..14732819hypothetical protein
LOC_Os09g24740NANA9+14737436..14742086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g24749NANA9+14744411..14744847NA
LOC_Os09g24760Os.28943.1.S1_x_at3/119+14749421..14752663retrotransposon protein, putative, unclassified
LOC_Os09g24770NANA9+14753593..14758908retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30005.1.S1_at--158--4111NONE
CGACAGGAGGTAAAAACGAGAGCTT
NONE
OsAffx.30005.1.S1_at--69--1371Chr09:14731575..14731599 (25 bp)
AGAGCTTAAATGTAGTGGTGGAGAC
LOC_Os09g24730
OsAffx.30005.1.S1_at--1050--7511Chr09:14731558..14731582 (25 bp)
GTGGAGACATGTGTCCATGGAGAAT
LOC_Os09g24730
OsAffx.30005.1.S1_at--957--10151Chr09:14731102..14731122 (21 bp)
TATCATTTTGCATTGGCAAGTGAAG
LOC_Os09g24730
OsAffx.30005.1.S1_at--446--5051Chr09:14731068..14731092 (25 bp)
GCAGAAAGTTGCTACATCGAGATCA
LOC_Os09g24730
OsAffx.30005.1.S1_at--798--3171Chr09:14731045..14731069 (25 bp)
CAATTGGATCTGGTCGACAAAAGGA
LOC_Os09g24730
OsAffx.30005.1.S1_at--248--5971Chr09:14730976..14731000 (25 bp)
GAGAAGTGTAGGTTGCCATTATACC
LOC_Os09g24730
OsAffx.30005.1.S1_at--439--7911Chr09:14730966..14730990 (25 bp)
GGTTGCCATTATACCTTCAAAATTT
LOC_Os09g24730
OsAffx.30005.1.S1_at--179--8051Chr09:14730934..14730958 (25 bp)
GGAGAGATTGAATGTGATCCACGTC
LOC_Os09g24730
OsAffx.30005.1.S1_at--346--5291Chr09:14730925..14730949 (25 bp)
GAATGTGATCCACGTCTTCATCCAA
LOC_Os09g24730
OsAffx.30005.1.S1_at--1032--9212Chr09:14730917..14730941 (25 bp)
TCCACGTCTTCATCCAAGCAGCGGA
LOC_Os09g24730
Target Sequence 
CGACAGGAGGTAAAAACGAGAGCTTAAATGTAGTGGTGGAGACATGTGTCCATGGAGAATATCATTTTGCATTGGCAAGT
GAAGGTATTGGAGGCAGAAAGTTGCTACATCGAGATCAATTGGATCTGGTCGACAAAAGGAGGAATGTGACAAAGGAACT
AGTTAGAGGTGGAAGGAACACATATGAGAAGTGTAGGTTGCCATTATACCTTCAAAATTTTCTTAATGGAGAGATTGAAT
GTGATCCACGTCTTCATCCAAGCAGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis