Browse Element(s) Details


OsAffx.30043.1.S1_at

Description tigr:9637.m02324
TID=OsAffx.30043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2660011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26590NANA9+16123900..16124478Auxin responsive protein, expressed
LOC_Os09g26600OsAffx.30043.1.S1_at11/119+16128616..16129068hypothetical protein
LOC_Os09g26610OsAffx.6408.1.S1_at11/119+16142734..16143534Auxin responsive protein, expressed
LOC_Os09g26620Os.12111.1.S1_at11/119+16152180..16154165Dormancy/auxin associated protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30043.1.S1_at--872--9431Chr09:16128794..16128818 (25 bp)
TCGGCTCGTCGGTCTATCCCGCAGT
LOC_Os09g26600
OsAffx.30043.1.S1_at--276--551Chr09:16128809..16128833 (25 bp)
ATCCCGCAGTCAACGCTGTGGATAT
LOC_Os09g26600
OsAffx.30043.1.S1_at--612--3251Chr09:16128819..16128843 (25 bp)
CAACGCTGTGGATATGGTAGCAGAT
LOC_Os09g26600
OsAffx.30043.1.S1_at--614--10431Chr09:16128859..16128883 (25 bp)
TTAGGGTTTCCGGAGGTGCCGCCAG
LOC_Os09g26600
OsAffx.30043.1.S1_at--459--6791Chr09:16128884..16128908 (25 bp)
GTTTTGAGAAGGTCAAAGCGGAGCC
LOC_Os09g26600
OsAffx.30043.1.S1_at--577--431Chr09:16128942..16128966 (25 bp)
ATCTACTCCAGCAGCCAAGAAGGTT
LOC_Os09g26600
OsAffx.30043.1.S1_at--781--5311Chr09:16128960..16128984 (25 bp)
GAAGGTTTGGATCTCAGTCGAATAC
LOC_Os09g26600
OsAffx.30043.1.S1_at--127--7971Chr09:16128968..16128992 (25 bp)
GGATCTCAGTCGAATACCATTTCAA
LOC_Os09g26600
OsAffx.30043.1.S1_at--532--7211Chr09:16128976..16129000 (25 bp)
GTCGAATACCATTTCAATTTTGGGA
LOC_Os09g26600
OsAffx.30043.1.S1_at--738--3131Chr09:16128991..16129015 (25 bp)
AATTTTGGGATTGATTTGAGCTGTG
LOC_Os09g26600
OsAffx.30043.1.S1_at--249--6531Chr09:16129003..16129027 (25 bp)
GATTTGAGCTGTGGCATGATTTTGT
LOC_Os09g26600
Target Sequence 
TCGGCTCGTCGGTCTATCCCGCAGTCAACGCTGTGGATATGGTAGCAGATGGAGCGCAGGGGGGTTTAGGGTTTCCGGAG
GTGCCGCCAGGTTTTGAGAAGGTCAAAGCGGAGCCGGCTCCAGCTACACCCGCGCCAGTGGCTTCTCCATCTACTCCAGC
AGCCAAGAAGGTTTGGATCTCAGTCGAATACCATTTCAATTTTGGGATTGATTTGAGCTGTGGCATGATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis