Browse Element(s) Details


Os.12111.1.S1_at

Description gb:AK099618.1
DB_XREF= gi:32984827
TID=Os.12111.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052O10, full insert sequence.
FL= gb:AK065169.1 gb:AK099618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2662011/11Dormancy/auxin associated protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26600OsAffx.30043.1.S1_at11/119+16128616..16129068hypothetical protein
LOC_Os09g26610OsAffx.6408.1.S1_at11/119+16142734..16143534Auxin responsive protein, expressed
LOC_Os09g26620Os.12111.1.S1_at11/119+16152180..16154165Dormancy/auxin associated protein, expressed
LOC_Os09g26630Os.26886.3.S1_x_at7/119+16156642..16158220transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26640NANA9+16161019..16166129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26650Os.31104.1.S1_at11/119+16170154..161747362Fe-2S iron-sulfur cluster binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007582biological_processphysiological process
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12111.1.S1_at--1023--8371Chr09:16153444..16153468 (25 bp)
GGCGAGAAACTGCACCTGCACAATA
LOC_Os09g26620
Os.12111.1.S1_at--130--1211Chr09:16153532..16153556 (25 bp)
AGTTAAGTTTCAGCTCGTCGATCCA
LOC_Os09g26620
Os.12111.1.S1_at--286--7431Chr09:16153573..16153597 (25 bp)
GTGTTCAGCTATCTGCACTACTACA
LOC_Os09g26620
Os.12111.1.S1_at--391--2151Chr09:16153595..16153619 (25 bp)
ACAGACTGCCGATTTTGTAGCCAAG
LOC_Os09g26620
Os.12111.1.S1_at--840--10131Chr09:16153632..16153656 (25 bp)
TATGCATGCTTGTACTACCACCGTA
LOC_Os09g26620
Os.12111.1.S1_at--934--7651Chr09:16153714..16153738 (25 bp)
GGGATCCTTGTACGTACACAACCTG
LOC_Os09g26620
Os.12111.1.S1_at--491--1112Chr09:16153740..16153764 (25 bp)
AGTGTACGTACACGATGCGATCGAT
LOC_Os09g26620
Os.12111.1.S1_at--1081--171Chr09:16153806..16153830 (25 bp)
ATATTACATGCGCTAGCTGGAGGGA
LOC_Os09g26620
Os.12111.1.S1_at--460--7011Chr09:16153852..16153876 (25 bp)
GTACTACGACTGATCTGTTTGCTTC
LOC_Os09g26620
Os.12111.1.S1_at--939--3771Chr09:16153879..16153903 (25 bp)
CTCTGCTTTCTTTGTCTCCAGAAAA
LOC_Os09g26620
Os.12111.1.S1_at--334--6031Chr09:16153908..16153932 (25 bp)
GAGAGGAGAGAAGTTTTTCCCCTGT
LOC_Os09g26620
Target Sequence 
GGCGAGAAACTGCACCTGCACAATATGAAGCAGCTAGAAACTGAAGGCGAGCAAAGAAGAAAAAAAACACTAAATTCTGC
TCTTTTTCAGTTAAGTTTCAGCTCGTCGATCCAGAGCATGAAATGTTCAGTGTTCAGCTATCTGCACTACTACAGACTGC
CGATTTTGTAGCCAAGGATGTATAAACGTATGCATGCTTGTACTACCACCGTATAATATACGTACGTGTACGTAGTAGAT
CGATGCAGACAAAAAGTCTTAGCAGAAGAGGGGATCCTTGTACGTACACAACCTGTAGTGTACGTACACGATGCGATCGA
TGATGAACTGATAGTATATGTATATGGCGCAGCTGGTGTATTATATTACATGCGCTAGCTGGAGGGAGAGTGTGCTAATG
TTGTACTAGTACTACGACTGATCTGTTTGCTTCTCCTCTGCTTTCTTTGTCTCCAGAAAAGAGGGAGAGGAGAGAAGTTT
TTCCCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis