Browse Element(s) Details


Os.31104.1.S1_at

Description gb:AK107833.1
DB_XREF= gi:32993042
TID=Os.31104.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-H02, full insert sequence.
FL= gb:AK107833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2665011/112Fe-2S iron-sulfur cluster binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26620Os.12111.1.S1_at11/119+16152180..16154165Dormancy/auxin associated protein, expressed
LOC_Os09g26630Os.26886.3.S1_x_at7/119+16156642..16158220transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26640NANA9+16161019..16166129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26650Os.31104.1.S1_at11/119+16170154..161747362Fe-2S iron-sulfur cluster binding domain containing protein, expressed
LOC_Os09g26660Os.5360.1.S1_at11/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed
LOC_Os09g26660Os.5360.2.S1_at10/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31104.1.S1_at--480--8891Chr09:16174086..16174110 (25 bp)
TGAGGGCTCTCTTGCATGTTCGACA
LOC_Os09g26650
Os.31104.1.S1_at--26--4091Chr09:16174106..16174129 (23 bp)
CGACATGCCATGTGTTGTAACGGAT
LOC_Os09g26650
Os.31104.1.S1_at--977--8051Chr09:16174243..16174267 (25 bp)
GGAGAACGATATGCTGGACCTTGCA
LOC_Os09g26650
Os.31104.1.S1_at--742--10731Chr09:16174263..16174284 (22 bp)
TTGCATTTGGGCTTACAGAGACATC
LOC_Os09g26650
Os.31104.1.S1_at--639--1351Chr09:16174279..16174376 (25 bp)
AGAGACATCCCGTCTTGGTTGCCAA
LOC_Os09g26650
Os.31104.1.S1_at--147--4391Chr09:16174373..16174397 (25 bp)
CCAAGTGATTGCAAGCCCTGAGCTT
LOC_Os09g26650
Os.31104.1.S1_at--533--8511Chr09:16174411..16174435 (25 bp)
TGGCACTGCCATCAGCTACGAGAAA
LOC_Os09g26650
Os.31104.1.S1_at--324--7691Chr09:16174449..16174473 (25 bp)
GGGTATGTTGCGAAATCACACTGAT
LOC_Os09g26650
Os.31104.1.S1_at--430--6311Chr09:16174503..16174527 (25 bp)
GATGACTCCAGTTTTGTAGAATACG
LOC_Os09g26650
Os.31104.1.S1_at--1146--6791Chr09:16174535..16174559 (25 bp)
GTTATTGGCGTATCCTCAATCTTGA
LOC_Os09g26650
Os.31104.1.S1_at--178--9751Chr09:16174599..16174623 (25 bp)
TAATTGATAACTTCCCTTCTCTCTT
LOC_Os09g26650
Target Sequence 
TGAGGGCTCTCTTGCATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCCTGTGGA
TGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCTTGGTTGCCAAGTGATTGCAAGCCCTG
AGCTTGATGGAATGCGATTGGCACTGCCATCAGCTACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGA
TTTCAACAAAATCATGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTATCCTCA
ATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis