Browse Element(s) Details


Os.5360.2.S1_at

Description gb:AK120739.1
DB_XREF= gi:37990362
TID=Os.5360.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003N01, full insert sequence.
FL= gb:AK120739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2666010/11respiratory burst oxidase protein E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26640NANA9+16161019..16166129retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26650Os.31104.1.S1_at11/119+16170154..161747362Fe-2S iron-sulfur cluster binding domain containing protein, expressed
LOC_Os09g26660Os.5360.1.S1_at11/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed
LOC_Os09g26660Os.5360.2.S1_at10/119+16185279..16196219respiratory burst oxidase protein E, putative, expressed
LOC_Os09g26670Os.17536.1.S1_at11/119+16199909..16200901expressed protein
LOC_Os09g26680OsAffx.29789.3.S1_x_at10/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.20677.1.S1_at8/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.29789.1.S1_x_at7/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26680OsAffx.31885.2.S1_x_at2/119+16202470..16210066hAT family dimerisation domain containing protein
LOC_Os09g26690OsAffx.20676.1.S1_at2/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.23660.1.S1_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class
LOC_Os09g26690OsAffx.25591.1.S1_x_at1/119+16210598..16213613transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009408biological_processresponse to heat
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5360.2.S1_at--456--2851Chr09:16195521..16195545 (25 bp)
AAGTCTTCACCAGGATTGCCTCCAA
LOC_Os09g26660
Os.5360.2.S1_at--1128--6611Chr09:16195683..16195704 (22 bp)
GTTGGAGTTTTCTACTGCGGCGCGC
LOC_Os09g26660
Os.5360.2.S1_at--785--8991Chr09:16195723..16195747 (25 bp)
TGAAGACCCTGTCCCACGAGATGAG
LOC_Os09g26660
Os.5360.2.S1_at--833--3631Chr09:16195828..16195852 (25 bp)
CTTCTCCTGATCTCCATAGCATTAG
LOC_Os09g26660
Os.5360.2.S1_at--433--6411Chr09:16195836..16195860 (25 bp)
GATCTCCATAGCATTAGGTACGGTA
LOC_Os09g26660
Os.5360.2.S1_at--134--2351Chr09:16195906..16195930 (25 bp)
AAAGCAAAGCTGACCTCTCTTCCTG
LOC_Os09g26660
Os.5360.2.S1_at--1131--9511Chr09:16195921..16195945 (25 bp)
TCTCTTCCTGATCTGGAACTGTACA
LOC_Os09g26660
Os.5360.2.S1_at--956--4631Chr09:16196037..16196061 (25 bp)
GCGTTGCTAATTTTCGCTATAGACA
LOC_Os09g26660
Os.5360.2.S1_at--961--2411Chr09:16196137..16196161 (25 bp)
AAAAACATCCTCTCTATCAGCTAGT
LOC_Os09g26660
Os.5360.2.S1_at--65--5071Chr09:16196167..16196191 (25 bp)
GCAGCTAATAAGCTCCAGTTGGCAA
LOC_Os09g26660
Os.5360.2.S1_at--644--91Chr09:16196196..16196220 (25 bp)
ATTCGGCAGCAACCATTACCAGTGA
NONE
Target Sequence 
AAGTCTTCACCAGGATTGCCTCCAAGCACCCCAATTCAACAGTTGGAGTTTTCTACTGCGGCGCGCCGACGNCTAGCCAA
GGAGCTGAAGACCCTGTCCCACGAGATGAGCCACAGGACGGGGACTCGCTTCCATTTCCACAAGGAGTACTTCTGAATTT
CTCATAGAAGTAAAAAGAAAAAGGATATAGCTTCTCCTGATCTCCATAGCATTAGGTACGGTAACTAAAGAAGACGAAGA
CGAAGAAGAAAATTTTTTGCACAGAAGCAAAGCAAAGCTGACCTCTCTTCCTGATCTGGAACTGTACATATAGTATATAT
AAAGGAGCACACAGTATACAGGGTAGGTAATAGCGATTTATATATAATTAACAAGCAGGGGAAAATGCAGGGTAAAAAAG
CGTTGCTAATTTTCGCTATAGACATCATCATACAGATATATACNCTACNCAGTATAGTTTAGTTTACAATTATAGTTTAC
AGTACCATGCNCCGTTCAAAAAAACATCCTCTCTATCAGCTAGTATTCAGCAGCTAATAAGCTCCAGTTGGCAATAAAAT
TCGGCAGCAACCATTACCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5360.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis